Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV246_RS00965 Genome accession   NZ_CP056697
Coordinates   208995..209531 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia marmotae strain RHBSTW-00605     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 203995..214531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV246_RS00945 (HV246_00945) aphA 204114..204827 (+) 714 WP_010377498.1 acid phosphatase AphA -
  HV246_RS00950 (HV246_00950) - 204938..205354 (+) 417 WP_016262776.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HV246_RS00955 (HV246_00955) - 205358..205714 (+) 357 WP_000155671.1 MmcQ/YjbR family DNA-binding protein -
  HV246_RS25135 - 205766..205873 (-) 108 Protein_181 hypothetical protein -
  HV246_RS00960 (HV246_00960) uvrA 205922..208744 (-) 2823 WP_000357769.1 excinuclease ABC subunit UvrA -
  HV246_RS00965 (HV246_00965) ssb 208995..209531 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV246_RS00970 (HV246_00970) - 209629..209910 (-) 282 WP_000224316.1 YjcB family protein -
  HV246_RS00975 (HV246_00975) - 210358..211944 (+) 1587 WP_105263468.1 EAL domain-containing protein -
  HV246_RS00980 (HV246_00980) soxS 211948..212271 (-) 324 WP_000019357.1 superoxide response transcriptional regulator SoxS -
  HV246_RS00985 (HV246_00985) soxR 212357..212821 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=460205 HV246_RS00965 WP_000168305.1 208995..209531(+) (ssb) [Escherichia marmotae strain RHBSTW-00605]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=460205 HV246_RS00965 WP_000168305.1 208995..209531(+) (ssb) [Escherichia marmotae strain RHBSTW-00605]
ATGGCCAGCAGAGGCGTAAATAAGGTTATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTTTATATC
GAAGGTCAGTTGCGTACCCGCAAATGGACCGACCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGCGGTAACATCGGGGGCGGTCAGCCGCAGG
GCGGTTGGGGCCAACCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGATTTCGATGACGATATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489