Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV252_RS26200 Genome accession   NZ_CP056682
Coordinates   5549559..5550086 (-) Length   175 a.a.
NCBI ID   WP_004097799.1    Uniprot ID   A0A0J2K732
Organism   Klebsiella grimontii strain RHBSTW-00634     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5530701..5549343 5549559..5550086 flank 216


Gene organization within MGE regions


Location: 5530701..5550086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV252_RS26115 (HV252_26120) - 5530701..5532065 (-) 1365 WP_059347288.1 anti-phage deoxyguanosine triphosphatase -
  HV252_RS26120 (HV252_26125) - 5532593..5533159 (+) 567 WP_081051437.1 DNA adenine methylase -
  HV252_RS26125 (HV252_26130) - 5533156..5534001 (+) 846 WP_048216955.1 8-oxoguanine DNA glycosylase -
  HV252_RS26130 (HV252_26135) - 5533945..5534619 (-) 675 WP_223862018.1 dehydrogenase -
  HV252_RS26135 (HV252_26140) - 5534597..5535202 (-) 606 WP_048216956.1 7-cyano-7-deazaguanine synthase -
  HV252_RS26140 (HV252_26145) - 5535199..5536440 (-) 1242 WP_081051438.1 PfkB family carbohydrate kinase -
  HV252_RS26145 (HV252_26150) - 5536437..5536769 (-) 333 WP_048216957.1 hypothetical protein -
  HV252_RS26150 (HV252_26155) - 5537129..5537734 (+) 606 WP_048216958.1 hypothetical protein -
  HV252_RS26155 (HV252_26160) - 5538019..5538261 (-) 243 WP_048216959.1 hypothetical protein -
  HV252_RS32570 - 5538521..5538589 (+) 69 Protein_5168 hypothetical protein -
  HV252_RS26160 (HV252_26165) - 5538691..5539722 (+) 1032 WP_001752311.1 IS630-like element ISEc33 family transposase -
  HV252_RS26165 (HV252_26170) - 5539758..5540141 (+) 384 Protein_5170 site-specific integrase -
  HV252_RS26170 (HV252_26175) - 5540145..5542271 (+) 2127 WP_059347289.1 AAA family ATPase -
  HV252_RS26175 (HV252_26180) - 5542274..5543965 (+) 1692 WP_059347290.1 ATP-dependent helicase -
  HV252_RS26180 (HV252_26185) - 5544166..5544585 (-) 420 WP_048216962.1 hypothetical protein -
  HV252_RS26185 (HV252_26190) - 5544578..5546611 (-) 2034 WP_048216963.1 integrase -
  HV252_RS26190 (HV252_26195) - 5546604..5548163 (-) 1560 WP_096150258.1 site-specific integrase -
  HV252_RS26195 (HV252_26200) - 5548153..5549400 (-) 1248 WP_048216965.1 site-specific integrase -
  HV252_RS26200 (HV252_26205) ssb 5549559..5550086 (-) 528 WP_004097799.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18776.81 Da        Isoelectric Point: 5.2456

>NTDB_id=460175 HV252_RS26200 WP_004097799.1 5549559..5550086(-) (ssb) [Klebsiella grimontii strain RHBSTW-00634]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQQGAGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=460175 HV252_RS26200 WP_004097799.1 5549559..5550086(-) (ssb) [Klebsiella grimontii strain RHBSTW-00634]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCGGCGAGTATCTGCGTAAAGGTTCTCAGGTCTACATT
GAAGGCCAGCTGCGTACGCGTAAATGGACTGACCAATCCGGTCAGGAAAAATACACCACCGAAGTTGTGGTTAACGTTGG
CGGCACGATGCAAATGCTCGGCGGTCGTCAGCAGGGCGCAGGCGCCCCGGCAGGCGGCGGTCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGGCTCCGGCAGCC
CCTTCCAATGAGCCGCCGATGGACTTTGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J2K732

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.771
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.611
  ssb Neisseria meningitidis MC58

48.045

100

0.491
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.491