Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HV135_RS01705 | Genome accession | NZ_CP056647 |
| Coordinates | 352107..352631 (+) | Length | 174 a.a. |
| NCBI ID | WP_003826621.1 | Uniprot ID | A0A5B0T4S2 |
| Organism | Citrobacter sp. RHBSTW-00229 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 298304..360721 | 352107..352631 | within | 0 |
Gene organization within MGE regions
Location: 298304..360721
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV135_RS01375 (HV135_01370) | - | 298304..298576 (-) | 273 | WP_020838472.1 | pyocin activator PrtN family protein | - |
| HV135_RS01380 (HV135_01375) | - | 298615..299187 (-) | 573 | WP_181632366.1 | 3'-5' exonuclease | - |
| HV135_RS01385 (HV135_01380) | - | 299209..299463 (-) | 255 | WP_053390038.1 | DUF4222 domain-containing protein | - |
| HV135_RS25930 | - | 299487..299756 (-) | 270 | Protein_266 | DUF550 domain-containing protein | - |
| HV135_RS01395 (HV135_01390) | - | 299927..300349 (-) | 423 | WP_181632367.1 | HNH endonuclease | - |
| HV135_RS01400 (HV135_01395) | - | 300351..300863 (-) | 513 | Protein_268 | hypothetical protein | - |
| HV135_RS01405 (HV135_01400) | - | 300887..301141 (-) | 255 | WP_181632369.1 | hypothetical protein | - |
| HV135_RS01410 (HV135_01405) | - | 301138..301314 (-) | 177 | WP_001253787.1 | hypothetical protein | - |
| HV135_RS01415 (HV135_01410) | - | 301302..301841 (-) | 540 | WP_097475729.1 | hypothetical protein | - |
| HV135_RS01420 (HV135_01415) | rdgC | 301949..302866 (-) | 918 | WP_181632370.1 | recombination-associated protein RdgC | - |
| HV135_RS01425 (HV135_01420) | - | 303505..303738 (+) | 234 | WP_001058060.1 | hypothetical protein | - |
| HV135_RS01430 (HV135_01425) | - | 304061..304693 (-) | 633 | WP_000381890.1 | S24 family peptidase | - |
| HV135_RS01435 (HV135_01430) | - | 304794..304997 (+) | 204 | WP_000548758.1 | Cro/CI family transcriptional regulator | - |
| HV135_RS01440 (HV135_01435) | - | 305021..305572 (+) | 552 | WP_000526199.1 | YmfL family putative regulatory protein | - |
| HV135_RS01445 (HV135_01440) | - | 305745..305930 (+) | 186 | WP_181632371.1 | DUF4222 domain-containing protein | - |
| HV135_RS25935 | - | 305914..306936 (+) | 1023 | WP_249418135.1 | hypothetical protein | - |
| HV135_RS01455 (HV135_01450) | - | 306936..307832 (+) | 897 | WP_181632464.1 | phage N-6-adenine-methyltransferase | - |
| HV135_RS01460 (HV135_01455) | - | 307825..309759 (+) | 1935 | WP_181632372.1 | DNA cytosine methyltransferase | - |
| HV135_RS01465 (HV135_01460) | - | 309756..310154 (+) | 399 | WP_000780154.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HV135_RS01470 (HV135_01465) | - | 310241..311128 (+) | 888 | WP_249418136.1 | ORF6N domain-containing protein | - |
| HV135_RS01475 (HV135_01470) | - | 311125..312120 (+) | 996 | WP_181632373.1 | DUF968 domain-containing protein | - |
| HV135_RS01480 (HV135_01475) | - | 312142..312831 (+) | 690 | WP_181632374.1 | bacteriophage antitermination protein Q | - |
| HV135_RS01485 (HV135_01480) | - | 313041..313322 (+) | 282 | WP_181632375.1 | hypothetical protein | - |
| HV135_RS01490 (HV135_01485) | - | 313410..313796 (+) | 387 | WP_061353905.1 | phage holin family protein | - |
| HV135_RS01495 (HV135_01490) | - | 313783..314064 (+) | 282 | WP_181632376.1 | phage holin family protein | - |
| HV135_RS01500 (HV135_01495) | - | 314220..314834 (+) | 615 | WP_181632377.1 | glycoside hydrolase family 19 protein | - |
| HV135_RS01505 (HV135_01500) | - | 314842..315111 (+) | 270 | WP_181632378.1 | hypothetical protein | - |
| HV135_RS25940 | - | 315068..315265 (+) | 198 | WP_249418157.1 | hypothetical protein | - |
| HV135_RS01515 (HV135_01510) | - | 315463..316026 (+) | 564 | WP_181632466.1 | phage antirepressor N-terminal domain-containing protein | - |
| HV135_RS01520 (HV135_01515) | - | 316116..316313 (+) | 198 | WP_000219369.1 | hypothetical protein | - |
| HV135_RS01525 (HV135_01520) | - | 316695..317423 (+) | 729 | WP_181632379.1 | Fur-regulated protein | - |
| HV135_RS01530 (HV135_01525) | - | 317674..318219 (+) | 546 | WP_057065046.1 | terminase small subunit | - |
| HV135_RS01535 (HV135_01530) | - | 318194..320116 (+) | 1923 | WP_057065045.1 | phage terminase large subunit family protein | - |
| HV135_RS01540 (HV135_01535) | - | 320116..320322 (+) | 207 | WP_003034782.1 | gpW family protein | - |
| HV135_RS01545 (HV135_01540) | - | 320319..321911 (+) | 1593 | WP_003826190.1 | phage portal protein | - |
| HV135_RS01550 (HV135_01545) | - | 321892..323229 (+) | 1338 | WP_136397966.1 | S49 family peptidase | - |
| HV135_RS01555 (HV135_01550) | - | 323239..323571 (+) | 333 | WP_181632380.1 | head decoration protein | - |
| HV135_RS01560 (HV135_01555) | - | 323639..324664 (+) | 1026 | WP_003034798.1 | major capsid protein | - |
| HV135_RS01565 (HV135_01560) | gpFI | 324710..325114 (+) | 405 | WP_057065033.1 | DNA-packaging protein FI | - |
| HV135_RS01570 (HV135_01565) | - | 325126..325479 (+) | 354 | WP_057065034.1 | head-tail joining protein | - |
| HV135_RS01575 (HV135_01570) | - | 325489..326043 (+) | 555 | WP_057065035.1 | phage tail protein | - |
| HV135_RS01580 (HV135_01575) | - | 326040..326438 (+) | 399 | WP_057065036.1 | phage minor tail U family protein | - |
| HV135_RS01585 (HV135_01580) | - | 326446..327183 (+) | 738 | WP_181632381.1 | phage tail protein | - |
| HV135_RS01590 (HV135_01585) | - | 327221..327628 (+) | 408 | WP_181632382.1 | phage minor tail protein G | - |
| HV135_RS01595 (HV135_01590) | - | 327679..327957 (+) | 279 | WP_008322441.1 | phage tail assembly protein T | - |
| HV135_RS01600 (HV135_01595) | - | 327935..330454 (+) | 2520 | WP_181632383.1 | phage tail tape measure protein | - |
| HV135_RS01605 (HV135_01600) | - | 330458..330805 (+) | 348 | WP_125363803.1 | phage tail protein | - |
| HV135_RS01610 (HV135_01605) | - | 330802..331557 (+) | 756 | WP_181632384.1 | phage minor tail protein L | - |
| HV135_RS01615 (HV135_01610) | - | 331559..332269 (+) | 711 | WP_049001720.1 | C40 family peptidase | - |
| HV135_RS01620 (HV135_01615) | - | 332301..332723 (+) | 423 | WP_181632385.1 | hypothetical protein | - |
| HV135_RS01625 (HV135_01620) | - | 332758..333348 (+) | 591 | WP_048217469.1 | tail assembly protein | - |
| HV135_RS01630 (HV135_01625) | - | 333403..336606 (+) | 3204 | WP_181632386.1 | host specificity protein J | - |
| HV135_RS01635 (HV135_01630) | - | 336608..337552 (+) | 945 | WP_181632387.1 | DUF6453 family protein | - |
| HV135_RS01640 (HV135_01635) | - | 337562..338866 (+) | 1305 | WP_181632388.1 | phage tail protein | - |
| HV135_RS01645 (HV135_01640) | - | 339008..339250 (-) | 243 | WP_000497432.1 | DinI family protein | - |
| HV135_RS01650 (HV135_01645) | - | 339272..339718 (+) | 447 | WP_077909674.1 | S24 family peptidase | - |
| HV135_RS01655 (HV135_01650) | - | 339751..340845 (-) | 1095 | WP_149911819.1 | site-specific integrase | - |
| HV135_RS01660 (HV135_01655) | dusA | 340933..341970 (+) | 1038 | WP_181632389.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| HV135_RS01665 (HV135_01660) | pspG | 342104..342346 (+) | 243 | WP_016155352.1 | envelope stress response protein PspG | - |
| HV135_RS01670 (HV135_01665) | - | 342579..343562 (-) | 984 | WP_141876101.1 | quinone oxidoreductase | - |
| HV135_RS01675 (HV135_01670) | dnaB | 343627..345042 (+) | 1416 | WP_003826610.1 | replicative DNA helicase | - |
| HV135_RS01680 (HV135_01675) | alr | 345090..346169 (+) | 1080 | WP_016155354.1 | alanine racemase | - |
| HV135_RS01685 (HV135_01680) | tyrB | 346299..347492 (+) | 1194 | WP_181221087.1 | aromatic amino acid transaminase | - |
| HV135_RS01690 (HV135_01685) | aphA | 347742..348455 (+) | 714 | WP_003826615.1 | acid phosphatase AphA | - |
| HV135_RS01695 (HV135_01690) | - | 348582..348938 (+) | 357 | WP_016155357.1 | MmcQ/YjbR family DNA-binding protein | - |
| HV135_RS01700 (HV135_01695) | uvrA | 349033..351855 (-) | 2823 | WP_016155358.1 | excinuclease ABC subunit UvrA | - |
| HV135_RS01705 (HV135_01700) | ssb | 352107..352631 (+) | 525 | WP_003826621.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| HV135_RS01710 (HV135_01705) | - | 352698..352979 (-) | 282 | WP_016155360.1 | YjcB family protein | - |
| HV135_RS01715 (HV135_01710) | - | 353531..355117 (+) | 1587 | WP_047499546.1 | EAL domain-containing protein | - |
| HV135_RS01720 (HV135_01715) | soxS | 355120..355443 (-) | 324 | WP_016155362.1 | superoxide response transcriptional regulator SoxS | - |
| HV135_RS01725 (HV135_01720) | soxR | 355530..355988 (+) | 459 | WP_016155363.1 | redox-sensitive transcriptional activator SoxR | - |
| HV135_RS01730 (HV135_01725) | ghxP | 356593..357942 (+) | 1350 | WP_016155449.1 | guanine/hypoxanthine transporter GhxP | - |
| HV135_RS01735 (HV135_01730) | - | 358100..359746 (+) | 1647 | WP_016155450.1 | Na+/H+ antiporter | - |
| HV135_RS01740 (HV135_01735) | - | 359831..360721 (-) | 891 | WP_016155366.1 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18621.66 Da Isoelectric Point: 5.2456
>NTDB_id=460071 HV135_RS01705 WP_003826621.1 352107..352631(+) (ssb) [Citrobacter sp. RHBSTW-00229]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=460071 HV135_RS01705 WP_003826621.1 352107..352631(+) (ssb) [Citrobacter sp. RHBSTW-00229]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGTGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCGGCTCCGGCAGCACCG
TCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGTGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCGGCTCCGGCAGCACCG
TCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
73.889 |
100 |
0.764 |
| ssb | Glaesserella parasuis strain SC1401 |
56.831 |
100 |
0.598 |
| ssb | Neisseria meningitidis MC58 |
48.603 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
48.603 |
100 |
0.5 |