Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV135_RS01705 Genome accession   NZ_CP056647
Coordinates   352107..352631 (+) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter sp. RHBSTW-00229     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 347107..357631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV135_RS01690 (HV135_01685) aphA 347742..348455 (+) 714 WP_003826615.1 acid phosphatase AphA -
  HV135_RS01695 (HV135_01690) - 348582..348938 (+) 357 WP_016155357.1 MmcQ/YjbR family DNA-binding protein -
  HV135_RS01700 (HV135_01695) uvrA 349033..351855 (-) 2823 WP_016155358.1 excinuclease ABC subunit UvrA -
  HV135_RS01705 (HV135_01700) ssb 352107..352631 (+) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV135_RS01710 (HV135_01705) - 352698..352979 (-) 282 WP_016155360.1 YjcB family protein -
  HV135_RS01715 (HV135_01710) - 353531..355117 (+) 1587 WP_047499546.1 EAL domain-containing protein -
  HV135_RS01720 (HV135_01715) soxS 355120..355443 (-) 324 WP_016155362.1 superoxide response transcriptional regulator SoxS -
  HV135_RS01725 (HV135_01720) soxR 355530..355988 (+) 459 WP_016155363.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=460071 HV135_RS01705 WP_003826621.1 352107..352631(+) (ssb) [Citrobacter sp. RHBSTW-00229]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=460071 HV135_RS01705 WP_003826621.1 352107..352631(+) (ssb) [Citrobacter sp. RHBSTW-00229]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGTGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCGGCTCCGGCAGCACCG
TCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5