Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV147_RS23015 Genome accession   NZ_CP056635
Coordinates   4684302..4684826 (-) Length   174 a.a.
NCBI ID   WP_046671365.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHBSTW-00302     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 4678782..4683333 4684302..4684826 flank 969


Gene organization within MGE regions


Location: 4678782..4684826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV147_RS22990 (HV147_22990) - 4678782..4679762 (+) 981 WP_000019403.1 IS5-like element IS5 family transposase -
  HV147_RS22995 (HV147_22995) - 4680369..4680650 (+) 282 WP_003844730.1 YjcB family protein -
  HV147_RS23000 (HV147_23000) - 4680734..4682551 (-) 1818 WP_275218821.1 autotransporter outer membrane beta-barrel domain-containing protein -
  HV147_RS23005 (HV147_23005) - 4682636..4683333 (+) 698 WP_227479394.1 IS1-like element IS1B family transposase -
  HV147_RS23010 (HV147_23010) - 4683344..4683820 (-) 477 WP_326930020.1 hypothetical protein -
  HV147_RS23015 (HV147_23015) ssb 4684302..4684826 (-) 525 WP_046671365.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18607.63 Da        Isoelectric Point: 5.2456

>NTDB_id=460042 HV147_RS23015 WP_046671365.1 4684302..4684826(-) (ssb) [Citrobacter freundii strain RHBSTW-00302]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGGQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=460042 HV147_RS23015 WP_046671365.1 4684302..4684826(-) (ssb) [Citrobacter freundii strain RHBSTW-00302]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAGGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGGGCAGTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.045

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.494