Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV201_RS23505 Genome accession   NZ_CP056505
Coordinates   4811917..4812441 (-) Length   174 a.a.
NCBI ID   WP_061547502.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHBSTW-00449     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4806917..4817441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV201_RS23485 (HV201_23495) soxR 4808559..4809017 (-) 459 WP_003031733.1 redox-sensitive transcriptional activator SoxR -
  HV201_RS23490 (HV201_23500) soxS 4809104..4809424 (+) 321 Protein_4630 superoxide response transcriptional regulator SoxS -
  HV201_RS23495 (HV201_23505) - 4809430..4811016 (-) 1587 WP_061547503.1 EAL domain-containing protein -
  HV201_RS23500 (HV201_23510) - 4811569..4811850 (+) 282 WP_044715249.1 YjcB family protein -
  HV201_RS23505 (HV201_23515) ssb 4811917..4812441 (-) 525 WP_061547502.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV201_RS23510 (HV201_23520) uvrA 4812693..4815515 (+) 2823 WP_061547501.1 excinuclease ABC subunit UvrA -
  HV201_RS23515 (HV201_23525) - 4815631..4815987 (-) 357 WP_003031719.1 MmcQ/YjbR family DNA-binding protein -
  HV201_RS23520 (HV201_23530) aphA 4816115..4816828 (-) 714 WP_032948323.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18660.69 Da        Isoelectric Point: 5.7683

>NTDB_id=459718 HV201_RS23505 WP_061547502.1 4811917..4812441(-) (ssb) [Citrobacter freundii strain RHBSTW-00449]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGTPAGGGQQQGGWGQPQQPQGGNQFSGGAHSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=459718 HV201_RS23505 WP_061547502.1 4811917..4812441(-) (ssb) [Citrobacter freundii strain RHBSTW-00449]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTACTCCGGCAGGTGGTGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGTGCGCACTCTCGTCCGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.826

100

0.77
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.045

100

0.494
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.494