Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV204_RS27405 Genome accession   NZ_CP056483
Coordinates   5815294..5815830 (-) Length   178 a.a.
NCBI ID   WP_181484018.1    Uniprot ID   -
Organism   Klebsiella sp. RHBSTW-00464     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5810294..5820830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV204_RS27395 (HV204_27395) - 5810777..5813044 (-) 2268 WP_181484016.1 TonB-dependent siderophore receptor -
  HV204_RS27400 (HV204_27400) - 5813654..5815204 (+) 1551 WP_181484017.1 lytic transglycosylase F -
  HV204_RS27405 (HV204_27405) ssb 5815294..5815830 (-) 537 WP_181484018.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV204_RS27410 (HV204_27410) uvrA 5816081..5818906 (+) 2826 WP_181484019.1 excinuclease ABC subunit UvrA -
  HV204_RS27415 (HV204_27415) - 5819049..5819459 (+) 411 WP_181484020.1 hypothetical protein -
  HV204_RS27420 (HV204_27420) - 5819462..5819779 (+) 318 WP_181484021.1 hypothetical protein -
  HV204_RS27425 (HV204_27425) - 5819783..5820136 (-) 354 WP_181484022.1 MmcQ/YjbR family DNA-binding protein -
  HV204_RS27430 (HV204_27430) - 5820139..5820555 (-) 417 WP_181484023.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19063.10 Da        Isoelectric Point: 5.2456

>NTDB_id=459693 HV204_RS27405 WP_181484018.1 5815294..5815830(-) (ssb) [Klebsiella sp. RHBSTW-00464]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEIVVNVGGTMQMLGGRQQGAGAPAGGNTGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=459693 HV204_RS27405 WP_181484018.1 5815294..5815830(-) (ssb) [Klebsiella sp. RHBSTW-00464]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAACCTGGGCCAGGACCCGGAAGTACGCTATATGCCTAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTGGTGCTGTTCGGTAAACTGGCAGAAGTGGCTGGTGAATACTTGCGTAAGGGTTCCCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGAAAAATATACCACCGAGATCGTGGTTAACGTTGG
CGGCACGATGCAAATGCTCGGCGGCCGTCAGCAGGGCGCAGGTGCTCCGGCAGGCGGCAACACGGGCGGCCAGCAGCAGG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGGCT
CCGGCAGCACCTTCCAATGAACCGCCGATGGACTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.979

100

0.612
  ssb Neisseria meningitidis MC58

46.927

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.472