Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV253_RS24305 Genome accession   NZ_CP056372
Coordinates   4933665..4934189 (-) Length   174 a.a.
NCBI ID   WP_004151744.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain RHBSTW-00636     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4928665..4939189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV253_RS24290 (HV253_24295) - 4929893..4930590 (+) 698 WP_223862167.1 IS1 family transposase -
  HV253_RS24295 (HV253_24300) - 4930606..4931373 (-) 768 Protein_4786 TonB-dependent receptor plug domain-containing protein -
  HV253_RS24300 (HV253_24305) - 4931960..4933540 (+) 1581 WP_032420791.1 lytic transglycosylase F -
  HV253_RS24305 (HV253_24310) ssb 4933665..4934189 (-) 525 WP_004151744.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV253_RS24310 (HV253_24315) uvrA 4934441..4937266 (+) 2826 WP_064147396.1 excinuclease ABC subunit UvrA -
  HV253_RS24315 (HV253_24320) - 4937267..4937623 (-) 357 WP_002884953.1 MmcQ/YjbR family DNA-binding protein -
  HV253_RS24320 (HV253_24325) - 4937627..4938043 (-) 417 WP_002884951.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HV253_RS24325 (HV253_24330) aphA 4938174..4938887 (-) 714 WP_004151745.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18711.70 Da        Isoelectric Point: 5.2358

>NTDB_id=459373 HV253_RS24305 WP_004151744.1 4933665..4934189(-) (ssb) [Klebsiella pneumoniae strain RHBSTW-00636]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=459373 HV253_RS24305 WP_004151744.1 4933665..4934189(-) (ssb) [Klebsiella pneumoniae strain RHBSTW-00636]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTTGCTGGTGAGTATCTGCGTAAAGGCTCTCAGGTGTACATT
GAAGGCCAGCTGCGTACCCGTAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACCGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCGCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGGCCCCGGCAGCGCCT
TCCAACGAACCGCCGATGGACTTCGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.776
  ssb Glaesserella parasuis strain SC1401

59.239

100

0.626
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5