Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   HV269_RS21580 Genome accession   NZ_CP056341
Coordinates   4471163..4471846 (+) Length   227 a.a.
NCBI ID   WP_191212545.1    Uniprot ID   -
Organism   Citrobacter sp. RHBSTW-00696     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4466163..4476846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV269_RS21550 (HV269_21550) - 4467124..4468140 (-) 1017 WP_191212542.1 YqaJ viral recombinase family protein -
  HV269_RS21555 (HV269_21555) - 4468201..4468344 (-) 144 WP_191212543.1 hypothetical protein -
  HV269_RS21560 (HV269_21560) bet 4468425..4469243 (-) 819 WP_099821799.1 phage recombination protein Bet -
  HV269_RS21565 (HV269_21565) ssb 4469323..4469742 (-) 420 WP_000795986.1 single-stranded DNA-binding protein -
  HV269_RS21570 (HV269_21570) - 4469758..4470084 (-) 327 WP_191212544.1 plasmid-related protein -
  HV269_RS21575 (HV269_21575) - 4470452..4471054 (+) 603 WP_023266676.1 hypothetical protein -
  HV269_RS21580 (HV269_21580) ideA 4471163..4471846 (+) 684 WP_191212545.1 endonuclease Regulator
  HV269_RS21585 (HV269_21585) - 4472192..4475002 (+) 2811 WP_191212546.1 ATPase -
  HV269_RS21590 (HV269_21590) - 4475112..4476188 (+) 1077 WP_191212547.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26497.54 Da        Isoelectric Point: 6.4771

>NTDB_id=459279 HV269_RS21580 WP_191212545.1 4471163..4471846(+) (ideA) [Citrobacter sp. RHBSTW-00696]
MNRTNFFVTFFIALFAIPAIAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRAYGQCDFEVDFKDRRTE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWARIDPVDEWEKVRDLKIETIQGKSNCYVSDSC

Nucleotide


Download         Length: 684 bp        

>NTDB_id=459279 HV269_RS21580 WP_191212545.1 4471163..4471846(+) (ideA) [Citrobacter sp. RHBSTW-00696]
ATGAATAGAACTAATTTTTTCGTTACTTTCTTTATAGCGTTGTTCGCTATACCTGCAATTGCAGAACACCCCACATCTTT
CAGTCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCTTGGGAAATTGGCCATCAACGCCAATGTTGGCAAAATGGTGGTCGTCGGAACTGTGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCAGTTGGAGAGCTTAACGGGGATAGATCAAATTTTC
GATTTGGCATGATTCCGAACGAACCAAGGGCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGCCGAACAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAGCTATTTGAAGCTTGGGCAAGAATTGACCCGGTTGATGAATGGGAAAAAGTACGTGATTTGAAGATTGAAA
CTATTCAAGGTAAGTCTAATTGCTATGTATCAGACAGCTGTTAA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(41-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

94.714

100

0.947
  dns Vibrio parahaemolyticus RIMD 2210633

51.528

100

0.52
  dns Aliivibrio fischeri ES114

50.87

100

0.515
  dns Vibrio cholerae strain A1552

51.111

99.119

0.507
  dns Campylobacter jejuni RM1221

38.605

94.714

0.366