Detailed information NTG0459211

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JHW37_RS06750
• Genome accession: NZ_CP068238
• Coordinates: 1436294..1437298 (+)
• Length: 334 a.a.
• NCBI ID: WP_053816833.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain A39-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1431294..1442298

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JHW37_RS06720 (JHW37_06720)	fghA	1431390..1432241 (+)	852	WP_003152338.1	S-formylglutathione hydrolase	-
JHW37_RS06725 (JHW37_06725)	ispF	1432312..1432785 (+)	474	WP_003152340.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JHW37_RS06730 (JHW37_06730)	truD	1432782..1433849 (+)	1068	WP_053816832.1	tRNA pseudouridine(13) synthase TruD	-
JHW37_RS06735 (JHW37_06735)	surE	1433837..1434586 (+)	750	WP_034080331.1	5'/3'-nucleotidase SurE	-
JHW37_RS06740 (JHW37_06740)	-	1434619..1435254 (+)	636	WP_074197311.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
JHW37_RS06745 (JHW37_06745)	-	1435300..1436193 (+)	894	WP_043102908.1	peptidoglycan DD-metalloendopeptidase family protein	-
JHW37_RS06750 (JHW37_06750)	rpoS	1436294..1437298 (+)	1005	WP_053816833.1	RNA polymerase sigma factor RpoS	Regulator
JHW37_RS06755 (JHW37_06755)	fdxA	1437724..1438047 (-)	324	WP_003092272.1	ferredoxin FdxA	-
JHW37_RS06760 (JHW37_06760)	mutS	1438114..1440681 (-)	2568	WP_079383494.1	DNA mismatch repair protein MutS	-
JHW37_RS06765 (JHW37_06765)	-	1440807..1441814 (-)	1008	WP_053816834.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38164.35 Da
• Isoelectric Point: 4.9677

>NTDB_id=459211 JHW37_RS06750 WP_053816833.1 1436294..1437298(+) (rpoS) [Pseudomonas aeruginosa strain A39-1]
MALKKEGPEFDHDDEVLLLEPGIMLDELSADEQPSLRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLSELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVGQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=459211 JHW37_RS06750 WP_053816833.1 1436294..1437298(+) (rpoS) [Pseudomonas aeruginosa strain A39-1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGACGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GCTGTCTGCCGACGAGCAGCCTTCTCTCCGGGCAACTCCAAAAGCCACCACCTCCTTCTCTTCCAAGCAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGCTGACGCCCGAAGAG
GAAGTCCACTTCGCCCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGACTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTCGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATCCGTTTGCCGATCCATGTGGTCAAGGAGCTGAACGTCTACCTGCGTGCGGC
GCGGGAGCTGACCCACAAGCTCGACCACGAACCGTCCCCCGAGGAAATCGCCAACCTGCTGGAAAAACCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAGCGGGTCACTTCGGTAGACGTTTCCCTTGGCCCGGACTCCGACAAGACCCTGCTC
GACACCCTGACCGACGATCGCCCCACCGACCCGTGCGAGTTGCTGCAGGACGACGACCTCAGCGAAAGCATCGATCAGTG
GCTGTCGGAACTCACCGACAAGCAGCGTGAAGTGGTGATTCGCCGCTTCGGCCTGCGCGGGCATGAAAGCAGCACGCTGG
AGGAGGTTGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTCGGCCAGATCCAGGTGGAGGCACTCAAGCGCCTGCGCGAG
ATACTGGAGAAGAACGGCCTGTCGAGCGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

• Sigma-70 region 3 (Sigma70_r3) (179-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653