Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV314_RS04390 Genome accession   NZ_CP056267
Coordinates   911946..912482 (+) Length   178 a.a.
NCBI ID   WP_016807973.1    Uniprot ID   A0A6L3Y3G1
Organism   Citrobacter sp. RHBSTW-00887     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 906946..917482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV314_RS04365 (HV314_04365) - 907168..907404 (-) 237 WP_134892789.1 hypothetical protein -
  HV314_RS04370 (HV314_04370) - 907473..908198 (+) 726 WP_016807977.1 TIGR03761 family integrating conjugative element protein -
  HV314_RS04375 (HV314_04375) - 908200..908754 (+) 555 WP_016807976.1 hypothetical protein -
  HV314_RS04380 (HV314_04380) - 908770..910779 (+) 2010 WP_016807975.1 DNA topoisomerase III -
  HV314_RS04385 (HV314_04385) - 911415..911885 (+) 471 WP_016807974.1 STY4534 family ICE replication protein -
  HV314_RS04390 (HV314_04390) ssb 911946..912482 (+) 537 WP_016807973.1 single-stranded DNA-binding protein Machinery gene
  HV314_RS04395 (HV314_04395) - 912547..912789 (+) 243 WP_016807972.1 DUF4160 domain-containing protein -
  HV314_RS04400 (HV314_04400) - 912773..913021 (+) 249 WP_004115558.1 DUF2442 domain-containing protein -
  HV314_RS04405 (HV314_04405) - 913158..913823 (+) 666 WP_016807971.1 PilL N-terminal domain-containing protein -
  HV314_RS04410 (HV314_04410) - 913820..914578 (+) 759 WP_016807970.1 hypothetical protein -
  HV314_RS04415 (HV314_04415) - 914590..915312 (+) 723 WP_016807969.1 TIGR03759 family integrating conjugative element protein -
  HV314_RS04420 (HV314_04420) - 915291..915926 (+) 636 WP_088221852.1 transglycosylase SLT domain-containing protein -
  HV314_RS04425 (HV314_04425) - 915932..916465 (+) 534 WP_016807967.1 integrating conjugative element protein -
  HV314_RS04430 (HV314_04430) - 916465..917037 (+) 573 WP_017145109.1 restriction endonuclease -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19182.31 Da        Isoelectric Point: 6.7299

>NTDB_id=458980 HV314_RS04390 WP_016807973.1 911946..912482(+) (ssb) [Citrobacter sp. RHBSTW-00887]
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSGEQKEVTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYITEVVVNIGGTMQMLGGRQSGSGQNTSSRNDWGQPQQPSGPTHSGQASGSSAGAPPMDFDDD
IPFIGFGYGVPKSAIHAL

Nucleotide


Download         Length: 537 bp        

>NTDB_id=458980 HV314_RS04390 WP_016807973.1 911946..912482(+) (ssb) [Citrobacter sp. RHBSTW-00887]
ATGTCCTCACGCGGCGTTAACAAGGTGATTCTTGTCGGTAATCTCGGCCAGGATCCTGAAGTGCGTTATATTCCCAATGG
CAGTGCAGTTGCCACCCTTTCTCTGGCCACGTCTGAGAGCTGGCGTGATAAGCAGTCCGGTGAACAGAAAGAAGTGACCG
AATGGCACCGGGTGGTTATTTTCGGCAAGCTGGCAGAAATTGCGGGTGAATATCTGCGCAAAGGCTCCCAGGTTTACATC
GAGGGCCAGCTGCGCACACGCAAATGGACCGATCAGTCTGGCCAGGAGAAATACATCACAGAGGTGGTGGTAAACATTGG
TGGCACCATGCAGATGCTTGGCGGTCGCCAGTCCGGCAGCGGTCAGAATACGTCTTCCCGGAATGACTGGGGCCAGCCTC
AGCAACCTTCCGGACCGACTCACAGTGGCCAGGCTTCCGGCAGCAGTGCCGGTGCGCCACCGATGGACTTCGATGACGAT
ATACCGTTCATTGGATTCGGGTATGGAGTACCAAAATCGGCAATCCATGCACTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

64.407

99.438

0.64
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.5
  ssb Neisseria meningitidis MC58

44.633

99.438

0.444
  ssb Neisseria gonorrhoeae MS11

44.318

98.876

0.438