Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV316_RS24420 Genome accession   NZ_CP056260
Coordinates   5063252..5063776 (-) Length   174 a.a.
NCBI ID   WP_015368746.1    Uniprot ID   A0A0F1KNA7
Organism   Klebsiella aerogenes strain RHBSTW-00898     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5058252..5068776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV316_RS24395 (HV316_24405) iraM 5058368..5058727 (-) 360 WP_015368737.1 anti-adapter protein IraM -
  HV316_RS24400 (HV316_24410) - 5059178..5060758 (+) 1581 WP_042894964.1 lytic transglycosylase F -
  HV316_RS24405 (HV316_24415) - 5060997..5061230 (+) 234 Protein_4805 transposase -
  HV316_RS24410 (HV316_24420) - 5061903..5062394 (+) 492 WP_015368742.1 hypothetical protein -
  HV316_RS24415 (HV316_24425) - 5062798..5063035 (+) 238 Protein_4807 IS630 family transposase -
  HV316_RS24420 (HV316_24430) ssb 5063252..5063776 (-) 525 WP_015368746.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV316_RS24425 (HV316_24435) uvrA 5064031..5066856 (+) 2826 WP_015368747.1 excinuclease ABC subunit UvrA -
  HV316_RS24430 (HV316_24440) - 5066999..5067406 (+) 408 WP_015368748.1 hypothetical protein -
  HV316_RS24435 (HV316_24445) - 5067406..5067723 (+) 318 WP_015368749.1 hypothetical protein -
  HV316_RS24440 (HV316_24450) - 5067725..5068078 (-) 354 WP_020079872.1 MmcQ/YjbR family DNA-binding protein -
  HV316_RS24445 (HV316_24455) - 5068082..5068498 (-) 417 WP_015368751.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18725.73 Da        Isoelectric Point: 5.2358

>NTDB_id=458972 HV316_RS24420 WP_015368746.1 5063252..5063776(-) (ssb) [Klebsiella aerogenes strain RHBSTW-00898]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEIVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=458972 HV316_RS24420 WP_015368746.1 5063252..5063776(-) (ssb) [Klebsiella aerogenes strain RHBSTW-00898]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGCGATAAGCAAACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGTTGTTCGGCAAACTAGCGGAAGTCGCTGGCGAATACCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGCACCCGTAAATGGACCGATCAGTCCGGTCAGGACAAGTACACCACTGAAATCGTGGTAAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGGCCCCGGCAGCGCCA
TCTAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F1KNA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.77
  ssb Glaesserella parasuis strain SC1401

59.783

100

0.632
  ssb Neisseria meningitidis MC58

49.162

100

0.506
  ssb Neisseria gonorrhoeae MS11

49.162

100

0.506