Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   KSO_RS06385 Genome accession   NC_020272
Coordinates   1256377..1257072 (+) Length   231 a.a.
NCBI ID   WP_007408165.1    Uniprot ID   A7Z793
Organism   Bacillus amyloliquefaciens IT-45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1251377..1262072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS06365 (KSO_006490) - 1252323..1253615 (+) 1293 WP_003152642.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  KSO_RS06370 (KSO_006495) comC 1253755..1254507 (+) 753 WP_003152643.1 prepilin peptidase Machinery gene
  KSO_RS06375 (KSO_006500) - 1254633..1255634 (+) 1002 WP_003152644.1 SPOR domain-containing protein -
  KSO_RS06380 (KSO_006505) - 1255776..1256345 (+) 570 WP_014305513.1 Maf family protein -
  KSO_RS06385 (KSO_006510) ysxA/radC 1256377..1257072 (+) 696 WP_007408165.1 RadC family protein Machinery gene
  KSO_RS06390 (KSO_006515) mreB 1257163..1258176 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  KSO_RS06395 (KSO_006520) mreC 1258207..1259070 (+) 864 WP_003152649.1 rod shape-determining protein MreC -
  KSO_RS06400 (KSO_006525) mreD 1259067..1259585 (+) 519 WP_003152650.1 rod shape-determining protein MreD -
  KSO_RS06405 (KSO_006530) minC 1259639..1260319 (+) 681 WP_003152653.1 septum site-determining protein MinC -
  KSO_RS06410 (KSO_006535) minD 1260322..1261125 (+) 804 WP_003152655.1 septum site-determining protein MinD -
  KSO_RS06415 (KSO_006540) - 1261253..1262056 (+) 804 WP_007408168.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26080.30 Da        Isoelectric Point: 9.1909

>NTDB_id=45893 KSO_RS06385 WP_007408165.1 1256377..1257072(+) (ysxA/radC) [Bacillus amyloliquefaciens IT-45]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=45893 KSO_RS06385 WP_007408165.1 1256377..1257072(+) (ysxA/radC) [Bacillus amyloliquefaciens IT-45]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGCCTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGAACGGTGAAGGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCATAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429