Detailed information NTG0458837

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: HV333_RS23900
• Genome accession: NZ_CP056235
• Coordinates: 4901582..4902106 (-)
• Length: 174 a.a.
• NCBI ID: WP_048241790.1
• Uniprot ID: -
• Organism: Citrobacter freundii strain RHBSTW-00942
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	4882296..4901361	4901582..4902106	flank	221

Gene organization within MGE regions

Location: 4882296..4902106

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV333_RS23830 (HV333_23835)	-	4882296..4882556 (+)	261	WP_053034685.1	hypothetical protein	-
HV333_RS23835 (HV333_23840)	-	4882757..4883470 (-)	714	WP_103848868.1	M48 family metallopeptidase	-
HV333_RS23840 (HV333_23845)	-	4883470..4886562 (-)	3093	WP_053034687.1	type I restriction endonuclease subunit R	-
HV333_RS23845 (HV333_23850)	-	4886717..4887055 (-)	339	WP_326929919.1	ATP-binding protein	-
HV333_RS23850 (HV333_23855)	-	4887098..4888314 (+)	1217	WP_165564867.1	IS3 family transposase	-
HV333_RS23855 (HV333_23860)	-	4888351..4889247 (-)	897	WP_326929920.1	helix-turn-helix domain-containing protein	-
HV333_RS23860 (HV333_23865)	-	4889274..4891940 (-)	2667	WP_053034689.1	TrlF family AAA-like ATPase	-
HV333_RS23865 (HV333_23870)	-	4891933..4893330 (-)	1398	WP_053034690.1	restriction endonuclease subunit S	-
HV333_RS23870 (HV333_23875)	-	4893327..4895747 (-)	2421	WP_191233026.1	type I restriction-modification system subunit M	-
HV333_RS23875 (HV333_23880)	-	4895800..4896039 (-)	240	WP_053034692.1	hypothetical protein	-
HV333_RS23880 (HV333_23885)	-	4896129..4896605 (-)	477	WP_103848870.1	protein kinase	-
HV333_RS23885 (HV333_23890)	-	4896598..4898607 (-)	2010	WP_191233027.1	integrase	-
HV333_RS23890 (HV333_23895)	-	4898600..4900183 (-)	1584	WP_053034695.1	tyrosine-type recombinase/integrase	-
HV333_RS23895 (HV333_23900)	-	4900189..4901361 (-)	1173	WP_053034696.1	tyrosine-type recombinase/integrase	-
HV333_RS23900 (HV333_23905)	ssb	4901582..4902106 (-)	525	WP_048241790.1	single-stranded DNA-binding protein SSB1	Machinery gene

Sequence

Protein

• Length: 174 a.a.
• Molecular weight: 18637.70 Da
• Isoelectric Point: 5.2456

>NTDB_id=458837 HV333_RS23900 WP_048241790.1 4901582..4902106(-) (ssb) [Citrobacter freundii strain RHBSTW-00942]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRLQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide

• Length: 525 bp

>NTDB_id=458837 HV333_RS23900 WP_048241790.1 4901582..4902106(-) (ssb) [Citrobacter freundii strain RHBSTW-00942]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAGGTTGTTGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGCGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCTGCAGCAGTCCGCTCCGGCAGCGCCG
TCTAACGAACCGCCGATGGATTTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	72.826	100	0.77
ssb	Glaesserella parasuis strain SC1401	56.284	100	0.592
ssb	Neisseria meningitidis MC58	48.045	100	0.494
ssb	Neisseria gonorrhoeae MS11	48.045	100	0.494