Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I6J12_RS09210 Genome accession   NZ_CP068060
Coordinates   1925006..1925596 (-) Length   196 a.a.
NCBI ID   WP_003038332.1    Uniprot ID   I0S7L7
Organism   Streptococcus anginosus strain FDAARGOS_1155     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1920006..1930596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J12_RS11650 - 1920191..1920271 (-) 81 WP_229031567.1 lipoprotein -
  I6J12_RS09185 (I6J12_09185) spx 1920357..1920755 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  I6J12_RS09190 (I6J12_09190) recA 1920842..1921987 (-) 1146 WP_003038330.1 recombinase RecA -
  I6J12_RS09195 (I6J12_09195) cinA 1922035..1923303 (-) 1269 WP_003038347.1 competence/damage-inducible protein A Machinery gene
  I6J12_RS09200 (I6J12_09200) - 1923901..1924314 (+) 414 WP_195190250.1 EamA family transporter -
  I6J12_RS09205 (I6J12_09205) - 1924423..1924995 (-) 573 WP_003038379.1 DNA-3-methyladenine glycosylase I -
  I6J12_RS09210 (I6J12_09210) ruvA 1925006..1925596 (-) 591 WP_003038332.1 Holliday junction branch migration protein RuvA Machinery gene
  I6J12_RS09215 (I6J12_09215) - 1925695..1926033 (+) 339 WP_003038373.1 hypothetical protein -
  I6J12_RS09220 (I6J12_09220) hexB 1926508..1928454 (-) 1947 WP_020999879.1 DNA mismatch repair endonuclease MutL Machinery gene
  I6J12_RS09225 (I6J12_09225) - 1928549..1929697 (-) 1149 WP_003038317.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21568.99 Da        Isoelectric Point: 6.4894

>NTDB_id=458835 I6J12_RS09210 WP_003038332.1 1925006..1925596(-) (ruvA) [Streptococcus anginosus strain FDAARGOS_1155]
MYEYFKGILSKITAKYIVVEVGQIGYTLHVANPYAYSGQVNQEIQVFVHQVVREDAQLLYGFRTEDEKQLFLNLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVATGVAPKQVAVAATSDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTNDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=458835 I6J12_RS09210 WP_003038332.1 1925006..1925596(-) (ruvA) [Streptococcus anginosus strain FDAARGOS_1155]
ATGTACGAATATTTTAAAGGAATTTTAAGTAAAATCACAGCCAAATATATTGTAGTGGAGGTGGGGCAAATTGGCTATAC
CCTGCATGTGGCAAATCCCTATGCCTATTCAGGTCAGGTCAATCAGGAGATTCAAGTTTTTGTTCATCAGGTGGTCAGAG
AGGATGCCCAGCTCCTCTACGGTTTTCGCACAGAGGATGAAAAGCAGCTTTTTCTCAATTTGATTTCGGTTTCTGGTATT
GGACCTGTTTCTGCTCTTGCGATAATCGCTGCCGATGATAATGCCGGTTTGGTGCAGGCTATTGAGCAGAAAAACATCAC
TTATCTGACAAAATTTCCTAAAATCGGCAAAAAAACGGCCCAGCAGATGGTGCTGGACTTAGAAGGCAAGGTTGTGGCAA
CAGGTGTTGCTCCTAAGCAAGTTGCTGTTGCAGCTACTAGTGACAATCAAGAATTGGAAGAAGCCATGGAAGCCATGCTA
GCTCTGGGATACAAGGCGGCTGAACTCAAGAAAATTAAGAAATTTTTTGAAGGAACCAATGATACCGCGGAAAACTATAT
CAAATCCGCTCTTAAGATGCTGGTAAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(152-194)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0S7L7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

84.772

100

0.852
  ruvA Streptococcus pneumoniae D39

84.772

100

0.852
  ruvA Streptococcus pneumoniae TIGR4

84.772

100

0.852
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.488

100

0.423