Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV333_RS16455 Genome accession   NZ_CP056235
Coordinates   3341146..3341760 (-) Length   204 a.a.
NCBI ID   WP_032936287.1    Uniprot ID   A0A0J1N982
Organism   Citrobacter freundii strain RHBSTW-00942     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3336146..3346760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV333_RS16440 (HV333_16440) helD 3336370..3338424 (-) 2055 WP_103848625.1 DNA helicase IV -
  HV333_RS16445 (HV333_16445) - 3338550..3338996 (+) 447 WP_003035892.1 YccF domain-containing protein -
  HV333_RS16450 (HV333_16450) yccS 3339015..3341168 (+) 2154 WP_103848632.1 YccS family putative transporter -
  HV333_RS16455 (HV333_16455) sxy/tfoX 3341146..3341760 (-) 615 WP_032936287.1 TfoX/Sxy family DNA transformation protein Regulator
  HV333_RS16460 (HV333_16460) sulA 3341978..3342487 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  HV333_RS16465 (HV333_16465) ompA 3342845..3343903 (+) 1059 WP_103848624.1 porin OmpA -
  HV333_RS16470 (HV333_16470) matP 3343993..3344445 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  HV333_RS16475 (HV333_16475) - 3344631..3346391 (+) 1761 WP_032936291.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23216.59 Da        Isoelectric Point: 8.6049

>NTDB_id=458834 HV333_RS16455 WP_032936287.1 3341146..3341760(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00942]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPESGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=458834 HV333_RS16455 WP_032936287.1 3341146..3341760(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00942]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAATCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1N982

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686