Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I6J14_RS08565 Genome accession   NZ_CP068057
Coordinates   1691537..1692130 (+) Length   197 a.a.
NCBI ID   WP_115253193.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1686537..1697130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS08555 (I6J14_08555) hexB 1688322..1690304 (+) 1983 WP_115253272.1 DNA mismatch repair endonuclease MutL Machinery gene
  I6J14_RS08560 (I6J14_08560) - 1690315..1691535 (+) 1221 WP_115253194.1 MFS transporter -
  I6J14_RS08565 (I6J14_08565) ruvA 1691537..1692130 (+) 594 WP_115253193.1 Holliday junction branch migration protein RuvA Machinery gene
  I6J14_RS08570 (I6J14_08570) - 1692140..1692712 (+) 573 WP_115253192.1 DNA-3-methyladenine glycosylase I -
  I6J14_RS08575 (I6J14_08575) - 1692715..1693068 (+) 354 WP_115253191.1 VOC family protein -
  I6J14_RS08580 (I6J14_08580) cinA 1693192..1694463 (+) 1272 WP_115253190.1 competence/damage-inducible protein A Machinery gene
  I6J14_RS08585 (I6J14_08585) recA 1694521..1695657 (+) 1137 WP_115245519.1 recombinase RecA Machinery gene
  I6J14_RS08590 (I6J14_08590) spx 1695955..1696353 (+) 399 WP_003053105.1 transcriptional regulator Spx -
  I6J14_RS08595 (I6J14_08595) - 1696465..1696734 (+) 270 WP_003045720.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21781.03 Da        Isoelectric Point: 5.3214

>NTDB_id=458713 I6J14_RS08565 WP_115253193.1 1691537..1692130(+) (ruvA) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNRGLVNAIDTSDIKYLTKFPKIGKKTAQQMVLDLAGKFVEVPQETSKAQPPTSSNNDELDEAIEALL
ALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=458713 I6J14_RS08565 WP_115253193.1 1691537..1692130(+) (ruvA) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACCAATGGACTGGGCTATAT
TATCAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGACGCTCACTTGTTGTTTGGGTTCCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGCATT
GGTCCGACAACAGCTCTCGCTATTGTGGCAGTTGATGATAATCGGGGTCTTGTTAACGCCATTGATACCAGTGACATCAA
ATACCTGACTAAATTTCCTAAAATCGGAAAAAAAACGGCACAACAGATGGTTCTTGACTTAGCCGGAAAATTTGTGGAGG
TTCCACAAGAGACTAGTAAAGCACAACCACCTACCTCCTCAAACAATGACGAGTTGGATGAGGCTATTGAAGCCCTTCTT
GCCCTAGGTTATAAAGCAACAGAACTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATACAT
CAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

68.528

100

0.685
  ruvA Streptococcus pneumoniae R6

68.528

100

0.685
  ruvA Streptococcus pneumoniae D39

68.528

100

0.685
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.406