Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV345_RS21785 Genome accession   NZ_CP056200
Coordinates   4517876..4518400 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter sp. RHBSTW-00986     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4504069..4517717 4517876..4518400 flank 159


Gene organization within MGE regions


Location: 4504069..4518400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV345_RS21725 (HV345_21740) - 4504069..4504674 (-) 606 WP_048216956.1 7-cyano-7-deazaguanine synthase -
  HV345_RS21730 (HV345_21745) - 4504671..4505912 (-) 1242 WP_081051438.1 PfkB family carbohydrate kinase -
  HV345_RS21735 (HV345_21750) - 4505909..4506241 (-) 333 WP_048216957.1 hypothetical protein -
  HV345_RS21740 (HV345_21755) - 4506601..4507206 (+) 606 WP_048216958.1 hypothetical protein -
  HV345_RS21745 (HV345_21760) - 4507491..4507733 (-) 243 WP_048216959.1 hypothetical protein -
  HV345_RS21750 (HV345_21765) - 4507993..4508458 (+) 466 Protein_4293 tyrosine-type recombinase/integrase -
  HV345_RS21755 (HV345_21770) - 4508462..4510588 (+) 2127 WP_059347289.1 ATP-dependent endonuclease -
  HV345_RS21760 (HV345_21775) - 4510591..4512282 (+) 1692 WP_048216961.1 UvrD-helicase domain-containing protein -
  HV345_RS21765 (HV345_21780) - 4512483..4512902 (-) 420 WP_048216962.1 hypothetical protein -
  HV345_RS21770 (HV345_21785) - 4512895..4514928 (-) 2034 WP_048216963.1 integrase -
  HV345_RS21775 (HV345_21790) - 4514921..4516483 (-) 1563 WP_048216964.1 site-specific integrase -
  HV345_RS21780 (HV345_21795) - 4516470..4517717 (-) 1248 WP_048216965.1 site-specific integrase -
  HV345_RS21785 (HV345_21800) ssb 4517876..4518400 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=458678 HV345_RS21785 WP_003826621.1 4517876..4518400(-) (ssb) [Citrobacter sp. RHBSTW-00986]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=458678 HV345_RS21785 WP_003826621.1 4517876..4518400(-) (ssb) [Citrobacter sp. RHBSTW-00986]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACCGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGTGGTGGGGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCGGCTCCGGCAGCGCCG
TCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5