Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   I6J15_RS02810 Genome accession   NZ_CP068056
Coordinates   545539..546537 (-) Length   332 a.a.
NCBI ID   WP_020916203.1    Uniprot ID   A0AB33AK26
Organism   Streptococcus lutetiensis strain FDAARGOS_1158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 540539..551537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J15_RS02785 (I6J15_02785) - 540583..541931 (+) 1349 WP_111712552.1 IS3 family transposase -
  I6J15_RS02790 (I6J15_02790) - 541977..543770 (-) 1794 WP_111712551.1 acyltransferase family protein -
  I6J15_RS02795 (I6J15_02795) - 543767..544147 (-) 381 WP_006531314.1 membrane protein -
  I6J15_RS02800 (I6J15_02800) - 544165..544596 (-) 432 WP_014334179.1 low molecular weight protein-tyrosine-phosphatase -
  I6J15_RS09385 - 544835..545203 (-) 369 WP_020916205.1 DUF7010 family protein -
  I6J15_RS02805 (I6J15_02805) - 545160..545366 (-) 207 WP_197712753.1 DUF7010 family protein -
  I6J15_RS02810 (I6J15_02810) ruvB 545539..546537 (-) 999 WP_020916203.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  I6J15_RS02815 (I6J15_02815) comR 546739..547617 (-) 879 WP_171009918.1 helix-turn-helix domain-containing protein Regulator
  I6J15_RS02820 (I6J15_02820) purB 547804..549102 (-) 1299 WP_058813549.1 adenylosuccinate lyase -
  I6J15_RS08990 - 549192..549287 (-) 96 Protein_522 phosphoribosylaminoimidazole carboxylase -
  I6J15_RS02825 (I6J15_02825) purK 549290..550381 (-) 1092 WP_111698145.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  I6J15_RS02830 (I6J15_02830) purE 550368..550856 (-) 489 WP_058813548.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  I6J15_RS02835 (I6J15_02835) - 550856..551305 (-) 450 WP_111712549.1 DUF523 domain-containing protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37381.84 Da        Isoelectric Point: 4.6106

>NTDB_id=458568 I6J15_RS02810 WP_020916203.1 545539..546537(-) (ruvB) [Streptococcus lutetiensis strain FDAARGOS_1158]
MSRILDNDIMGDEEFVERTLRPQYLKEYIGQDKVKNQLKIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAIEEVLYSAMEDFYIDIMIGNGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYAVDDLTEIVERTADIFEMEIVHEAAQELARRSRGTPRIANRLLKRVRDYAQIMGDGIIT
KDITDKALTMLDVDHEGLDYIDQKILRTMIEVYNGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFIMRTRTGRVATAK
AYDHLGYSYAEK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=458568 I6J15_RS02810 WP_020916203.1 545539..546537(-) (ruvB) [Streptococcus lutetiensis strain FDAARGOS_1158]
ATGAGTAGAATTTTAGATAATGATATCATGGGTGACGAAGAATTTGTGGAACGTACGCTTCGTCCTCAATATTTAAAAGA
ATATATTGGACAGGATAAGGTTAAAAATCAGCTGAAAATTTTTATCGAAGCAGCAAAATTACGTGATGAATCACTTGACC
ATGTGCTATTGTTTGGCCCTCCGGGTCTTGGTAAGACGACAATGGCATTTGTGATTGCTAACGAATTAGGGGTGAATCTC
AAACAAACTTCTGGCCCAGCTATTGAAAAAGCTGGTGATTTGGTTGCTATTTTGAATGATTTGGAACCTGGGGATGTTTT
GTTTATCGATGAAATTCATCGTATGCCGATGGCGATAGAAGAAGTGCTTTATAGCGCTATGGAAGATTTCTATATTGATA
TTATGATTGGTAATGGTGAGACTAGTCGTAGTGTTCATTTGGATTTGCCACCTTTTACGCTAATTGGAGCAACAACTCGA
GCCGGGATGCTTTCGAATCCATTGCGTGCGCGTTTTGGAATTACGGGGCATATGGAATATTATGCGGTTGACGATTTGAC
AGAAATTGTTGAACGCACAGCTGATATTTTTGAAATGGAAATCGTGCATGAAGCTGCACAAGAATTGGCGCGACGTAGCC
GAGGTACACCACGTATTGCCAACCGTTTGTTAAAACGGGTTCGTGACTATGCTCAAATTATGGGTGATGGTATTATTACA
AAAGATATTACAGATAAAGCTTTAACAATGCTGGATGTCGATCATGAAGGGCTTGATTACATTGACCAAAAAATCTTGCG
TACTATGATTGAAGTTTATAATGGTGGTCCAGTTGGTTTGGGAACTCTATCTGTTAATATTGCTGAAGAGCGTGATACGG
TTGAGGATATGTATGAACCTTATTTGATTCAAAAGGGCTTTATTATGCGTACACGTACAGGTCGTGTAGCTACAGCTAAA
GCATATGATCATCTGGGGTATTCTTATGCTGAAAAATAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

RuvB AAA lid domain (AAA_lid_4)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33AK26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

89.759

100

0.898
  ruvB Streptococcus pneumoniae R6

89.759

100

0.898
  ruvB Streptococcus pneumoniae D39

89.759

100

0.898
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.92

97.289

0.602
  ruvB Helicobacter pylori 26695

50.155

97.289

0.488
  ruvB Synechocystis sp. PCC 6803

49.524

94.88

0.47