Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HV276_RS14745 | Genome accession | NZ_CP056165 |
| Coordinates | 2997418..2997933 (+) | Length | 171 a.a. |
| NCBI ID | WP_000168264.1 | Uniprot ID | A0A7L5X6G7 |
| Organism | Escherichia marmotae strain RHBSTW-00777 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2959174..3003203 | 2997418..2997933 | within | 0 |
Gene organization within MGE regions
Location: 2959174..3003203
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV276_RS14465 (HV276_14470) | - | 2959174..2961114 (-) | 1941 | WP_016248905.1 | helix-hairpin-helix domain-containing protein | - |
| HV276_RS14470 (HV276_14475) | - | 2961111..2961872 (-) | 762 | WP_105224971.1 | PP2C family serine/threonine-protein phosphatase | - |
| HV276_RS14475 (HV276_14480) | - | 2961869..2962528 (-) | 660 | WP_000003146.1 | vWA domain-containing protein | - |
| HV276_RS14480 (HV276_14485) | - | 2962746..2962802 (-) | 57 | WP_106907789.1 | type I toxin-antitoxin system Ibs family toxin | - |
| HV276_RS24120 | - | 2963032..2963136 (+) | 105 | Protein_2879 | hypothetical protein | - |
| HV276_RS14485 (HV276_14490) | - | 2963266..2963628 (+) | 363 | WP_105288867.1 | bactoprenol glucosyl transferase | - |
| HV276_RS14490 (HV276_14495) | - | 2963625..2964551 (+) | 927 | WP_105288868.1 | glycosyltransferase family 2 protein | - |
| HV276_RS14495 (HV276_14500) | - | 2964541..2966013 (+) | 1473 | WP_105288869.1 | glucosyltransferase domain-containing protein | - |
| HV276_RS24125 | - | 2966083..2967858 (-) | 1776 | WP_228929179.1 | phage head-binding domain-containing protein | - |
| HV276_RS14505 (HV276_14510) | - | 2968023..2970020 (-) | 1998 | WP_105288870.1 | DNA transfer protein | - |
| HV276_RS14510 (HV276_14515) | - | 2970020..2971324 (-) | 1305 | WP_105288871.1 | DNA transfer protein | - |
| HV276_RS14515 (HV276_14520) | - | 2971334..2972029 (-) | 696 | WP_021516147.1 | hypothetical protein | - |
| HV276_RS14520 (HV276_14525) | - | 2972032..2972487 (-) | 456 | WP_021516148.1 | DUF2824 family protein | - |
| HV276_RS14525 (HV276_14530) | - | 2972487..2973188 (-) | 702 | WP_021823762.1 | hypothetical protein | - |
| HV276_RS14530 (HV276_14535) | - | 2973188..2974606 (-) | 1419 | WP_001122392.1 | packaged DNA stabilization protein gp10 | - |
| HV276_RS14535 (HV276_14540) | - | 2974616..2975077 (-) | 462 | WP_047089868.1 | packaged DNA stabilization gp4 family protein | - |
| HV276_RS14540 (HV276_14545) | - | 2975058..2975246 (-) | 189 | WP_001362792.1 | hypothetical protein | - |
| HV276_RS14545 (HV276_14550) | - | 2975288..2976541 (-) | 1254 | WP_105288964.1 | P22 phage major capsid protein family protein | - |
| HV276_RS14550 (HV276_14555) | - | 2976560..2977453 (-) | 894 | WP_115775507.1 | scaffolding protein | - |
| HV276_RS14555 (HV276_14560) | - | 2977544..2979742 (-) | 2199 | WP_000818368.1 | portal protein | - |
| HV276_RS14560 (HV276_14565) | - | 2979744..2981159 (-) | 1416 | WP_105288930.1 | PBSX family phage terminase large subunit | - |
| HV276_RS14565 (HV276_14570) | - | 2981156..2981683 (-) | 528 | WP_089602606.1 | terminase small subunit | - |
| HV276_RS14570 (HV276_14575) | - | 2981705..2981950 (+) | 246 | WP_001228633.1 | hypothetical protein | - |
| HV276_RS14575 (HV276_14580) | - | 2981947..2982852 (+) | 906 | WP_001544378.1 | LPO_1073/Vpar_1526 family protein | - |
| HV276_RS23855 | - | 2982950..2983156 (-) | 207 | Protein_2899 | hypothetical protein | - |
| HV276_RS14580 (HV276_14585) | - | 2983210..2983470 (+) | 261 | WP_000093956.1 | hypothetical protein | - |
| HV276_RS14585 (HV276_14590) | - | 2983537..2984061 (-) | 525 | WP_001064346.1 | Rha family transcriptional regulator | - |
| HV276_RS14590 (HV276_14595) | - | 2984265..2984417 (-) | 153 | WP_001544376.1 | hypothetical protein | - |
| HV276_RS14595 (HV276_14600) | - | 2984405..2984872 (-) | 468 | WP_089571404.1 | lysis protein | - |
| HV276_RS14600 (HV276_14605) | - | 2984869..2985345 (-) | 477 | WP_000229392.1 | glycoside hydrolase family protein | - |
| HV276_RS14605 (HV276_14610) | - | 2985329..2985652 (-) | 324 | WP_000783734.1 | phage holin, lambda family | - |
| HV276_RS14620 (HV276_14625) | - | 2986114..2986632 (-) | 519 | WP_105279761.1 | antiterminator Q family protein | - |
| HV276_RS14625 (HV276_14630) | - | 2986629..2986817 (-) | 189 | WP_000994516.1 | protein ninH | - |
| HV276_RS14630 (HV276_14635) | - | 2986814..2987176 (-) | 363 | WP_001008200.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HV276_RS14635 (HV276_14640) | - | 2987173..2987463 (-) | 291 | WP_000002244.1 | DUF1364 domain-containing protein | - |
| HV276_RS14640 (HV276_14645) | - | 2987463..2987732 (-) | 270 | WP_021516158.1 | hypothetical protein | - |
| HV276_RS14645 (HV276_14650) | - | 2987725..2987895 (-) | 171 | WP_000566866.1 | protein NinF | - |
| HV276_RS14650 (HV276_14655) | - | 2987892..2988074 (-) | 183 | WP_024189304.1 | NinE family protein | - |
| HV276_RS14655 (HV276_14660) | ninD | 2988041..2988214 (-) | 174 | WP_000984218.1 | protein NinD | - |
| HV276_RS14660 (HV276_14665) | - | 2988211..2989083 (-) | 873 | WP_162826122.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| HV276_RS14665 (HV276_14670) | - | 2989080..2989520 (-) | 441 | WP_115775509.1 | recombination protein NinB | - |
| HV276_RS14670 (HV276_14675) | - | 2989734..2990060 (-) | 327 | WP_000796283.1 | hypothetical protein | - |
| HV276_RS14675 (HV276_14680) | - | 2990133..2991509 (-) | 1377 | WP_001248388.1 | replicative DNA helicase | - |
| HV276_RS14680 (HV276_14685) | - | 2991506..2992327 (-) | 822 | WP_181502868.1 | replication protein | - |
| HV276_RS14685 (HV276_14690) | - | 2992314..2992475 (-) | 162 | WP_000166961.1 | hypothetical protein | - |
| HV276_RS14690 (HV276_14695) | - | 2992510..2992788 (-) | 279 | WP_000424164.1 | lambda phage CII family protein | - |
| HV276_RS14695 (HV276_14700) | - | 2992897..2993091 (-) | 195 | WP_000620665.1 | Cro/CI family transcriptional regulator | - |
| HV276_RS14700 (HV276_14705) | - | 2993198..2993914 (+) | 717 | WP_000428318.1 | LexA family protein | - |
| HV276_RS14705 (HV276_14710) | - | 2993932..2994300 (+) | 369 | WP_105288934.1 | hypothetical protein | - |
| HV276_RS14710 (HV276_14715) | - | 2994668..2994967 (+) | 300 | WP_069924756.1 | hypothetical protein | - |
| HV276_RS14715 (HV276_14720) | - | 2995046..2995246 (+) | 201 | WP_000213975.1 | antirestriction Ral family protein | - |
| HV276_RS14720 (HV276_14725) | - | 2995274..2995516 (+) | 243 | WP_105288933.1 | DUF7446 family protein | - |
| HV276_RS14725 (HV276_14730) | - | 2995684..2996100 (+) | 417 | WP_105288937.1 | hypothetical protein | - |
| HV276_RS14730 (HV276_14735) | - | 2996184..2996318 (+) | 135 | WP_000972063.1 | hypothetical protein | - |
| HV276_RS14735 (HV276_14740) | kil | 2996303..2996455 (+) | 153 | WP_001243355.1 | host cell division inhibitory peptide Kil | - |
| HV276_RS14740 (HV276_14745) | - | 2996710..2997417 (+) | 708 | WP_044865624.1 | Rad52/Rad22 family DNA repair protein | - |
| HV276_RS14745 (HV276_14750) | ssb | 2997418..2997933 (+) | 516 | WP_000168264.1 | single-stranded DNA-binding protein | Machinery gene |
| HV276_RS14750 (HV276_14755) | - | 2997942..2998490 (+) | 549 | WP_016248935.1 | 3'-5' exonuclease | - |
| HV276_RS14755 (HV276_14760) | - | 2998507..2998800 (+) | 294 | WP_064529150.1 | phage anti-RecBCD protein | - |
| HV276_RS14760 (HV276_14765) | - | 2998820..2999101 (+) | 282 | WP_000773121.1 | DUF5405 family protein | - |
| HV276_RS14765 (HV276_14770) | - | 2999098..2999262 (+) | 165 | WP_105288956.1 | DUF2737 family protein | - |
| HV276_RS14770 (HV276_14775) | - | 2999259..2999858 (+) | 600 | WP_105288957.1 | hypothetical protein | - |
| HV276_RS24545 (HV276_14780) | - | 2999855..3000754 (+) | 900 | WP_411161990.1 | ead/Ea22-like family protein | - |
| HV276_RS24550 (HV276_14785) | - | 3000751..3001377 (+) | 627 | WP_220131391.1 | DUF551 domain-containing protein | - |
| HV276_RS23860 | - | 3001370..3001654 (+) | 285 | WP_105287482.1 | ASCH domain-containing protein | - |
| HV276_RS14785 (HV276_14790) | - | 3001727..3001894 (+) | 168 | WP_032352680.1 | hypothetical protein | - |
| HV276_RS14790 (HV276_14795) | - | 3001934..3002152 (+) | 219 | WP_001303849.1 | excisionase | - |
| HV276_RS14795 (HV276_14800) | - | 3002130..3003203 (+) | 1074 | WP_061360905.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19154.34 Da Isoelectric Point: 7.4686
>NTDB_id=458513 HV276_RS14745 WP_000168264.1 2997418..2997933(+) (ssb) [Escherichia marmotae strain RHBSTW-00777]
MASRGVNKVIIIGRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEQKEQTEWHRVVMSGKLAEIASEYLRKGSEVYL
EGKLRTRKWQDQSGQDRFTTEVIVGVGGTMQMLGGKQGGNEQSSPQRNNGQQQRQQPQQQGNHSEPPMDFDDDIPFAPVT
LPFPRHAIHAI
MASRGVNKVIIIGRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEQKEQTEWHRVVMSGKLAEIASEYLRKGSEVYL
EGKLRTRKWQDQSGQDRFTTEVIVGVGGTMQMLGGKQGGNEQSSPQRNNGQQQRQQPQQQGNHSEPPMDFDDDIPFAPVT
LPFPRHAIHAI
Nucleotide
Download Length: 516 bp
>NTDB_id=458513 HV276_RS14745 WP_000168264.1 2997418..2997933(+) (ssb) [Escherichia marmotae strain RHBSTW-00777]
ATGGCAAGCAGAGGCGTAAATAAGGTGATCATTATTGGTCGCCTTGGTCACGATCCAGAAATCAGATATTCACCATCAGG
AACGGCATTTGCAAACCTTACAGTTGCTACGTCAGAACAATGGCGTGATAAGCAAACTGGAGAGCAAAAGGAGCAGACGG
AGTGGCACCGTGTGGTAATGAGCGGGAAACTAGCAGAAATTGCCAGCGAGTATCTGCGAAAAGGCTCAGAGGTTTATCTT
GAAGGCAAATTGCGGACAAGAAAATGGCAGGATCAAAGCGGACAGGATCGGTTCACTACCGAAGTCATCGTGGGCGTTGG
TGGAACCATGCAAATGCTTGGTGGCAAGCAAGGAGGCAATGAACAGTCTTCACCTCAGCGAAATAACGGTCAGCAACAAA
GACAGCAACCTCAGCAGCAAGGGAATCACAGCGAACCACCTATGGATTTTGACGACGATATCCCCTTTGCACCAGTAACT
CTCCCCTTCCCTCGTCACGCTATTCACGCAATTTAA
ATGGCAAGCAGAGGCGTAAATAAGGTGATCATTATTGGTCGCCTTGGTCACGATCCAGAAATCAGATATTCACCATCAGG
AACGGCATTTGCAAACCTTACAGTTGCTACGTCAGAACAATGGCGTGATAAGCAAACTGGAGAGCAAAAGGAGCAGACGG
AGTGGCACCGTGTGGTAATGAGCGGGAAACTAGCAGAAATTGCCAGCGAGTATCTGCGAAAAGGCTCAGAGGTTTATCTT
GAAGGCAAATTGCGGACAAGAAAATGGCAGGATCAAAGCGGACAGGATCGGTTCACTACCGAAGTCATCGTGGGCGTTGG
TGGAACCATGCAAATGCTTGGTGGCAAGCAAGGAGGCAATGAACAGTCTTCACCTCAGCGAAATAACGGTCAGCAACAAA
GACAGCAACCTCAGCAGCAAGGGAATCACAGCGAACCACCTATGGATTTTGACGACGATATCCCCTTTGCACCAGTAACT
CTCCCCTTCCCTCGTCACGCTATTCACGCAATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
62.712 |
100 |
0.649 |
| ssb | Glaesserella parasuis strain SC1401 |
52.486 |
100 |
0.556 |
| ssb | Neisseria gonorrhoeae MS11 |
42.045 |
100 |
0.433 |
| ssb | Neisseria meningitidis MC58 |
41.477 |
100 |
0.427 |