Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV284_RS13420 Genome accession   NZ_CP056159
Coordinates   2738975..2739511 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia marmotae strain RHBSTW-00814     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2733975..2744511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV284_RS13400 (HV284_13405) soxR 2735685..2736149 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  HV284_RS13405 (HV284_13410) soxS 2736235..2736558 (+) 324 WP_000019357.1 superoxide response transcriptional regulator SoxS -
  HV284_RS13410 (HV284_13415) - 2736562..2738148 (-) 1587 WP_181474170.1 EAL domain-containing protein -
  HV284_RS13415 (HV284_13420) - 2738596..2738877 (+) 282 WP_000224316.1 YjcB family protein -
  HV284_RS13420 (HV284_13425) ssb 2738975..2739511 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV284_RS13425 (HV284_13430) uvrA 2739762..2742584 (+) 2823 WP_000357769.1 excinuclease ABC subunit UvrA -
  HV284_RS25395 - 2742633..2742740 (+) 108 Protein_2671 hypothetical protein -
  HV284_RS13430 (HV284_13435) - 2742792..2743148 (-) 357 WP_000155671.1 MmcQ/YjbR family DNA-binding protein -
  HV284_RS13435 (HV284_13440) - 2743152..2743568 (-) 417 WP_000270380.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HV284_RS13440 (HV284_13445) aphA 2743679..2744392 (-) 714 WP_010377498.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=458488 HV284_RS13420 WP_000168305.1 2738975..2739511(-) (ssb) [Escherichia marmotae strain RHBSTW-00814]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=458488 HV284_RS13420 WP_000168305.1 2738975..2739511(-) (ssb) [Escherichia marmotae strain RHBSTW-00814]
ATGGCCAGCAGAGGCGTAAATAAGGTTATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGTGAATATCTGCGTAAAGGTTCCCAGGTTTATATC
GAAGGTCAGTTGCGTACCCGCAAATGGACCGACCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGCGGTAACATCGGGGGCGGTCAGCCGCAGG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGATTTCGATGACGATATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489