Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   JKF55_RS14755 Genome accession   NZ_CP068035
Coordinates   3050640..3051296 (-) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain U90     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3045640..3056296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKF55_RS14725 (JKF55_14725) yecA 3046891..3047556 (-) 666 WP_000847882.1 UPF0149 family protein YecA -
  JKF55_RS14745 (JKF55_14745) pgsA 3048206..3048754 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JKF55_RS14750 (JKF55_14750) uvrC 3048811..3050643 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  JKF55_RS14755 (JKF55_14755) letA 3050640..3051296 (-) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  JKF55_RS27340 - 3051438..3051509 (+) 72 Protein_2924 transcriptional regulator -
  JKF55_RS14760 (JKF55_14760) yecU 3051592..3051768 (+) 177 WP_000590347.1 protein YecU -
  JKF55_RS14765 (JKF55_14765) yecF 3051755..3051979 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  JKF55_RS14770 (JKF55_14770) sdiA 3052046..3052768 (-) 723 WP_001154276.1 transcriptional regulator SdiA -
  JKF55_RS14775 (JKF55_14775) tcyN 3052998..3053750 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  JKF55_RS14780 (JKF55_14780) tcyL 3053747..3054415 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  JKF55_RS14785 (JKF55_14785) dcyD 3054430..3055416 (-) 987 WP_001128238.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=458412 JKF55_RS14755 WP_000611335.1 3050640..3051296(-) (letA) [Escherichia coli strain U90]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=458412 JKF55_RS14755 WP_000611335.1 3050640..3051296(-) (letA) [Escherichia coli strain U90]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGAGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAACGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTTAAAATCATCATG
CTTACGGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCAGGTGCTGCTGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCTGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486