Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HWV00_RS19825 Genome accession   NZ_CP056123
Coordinates   4438201..4438818 (-) Length   205 a.a.
NCBI ID   WP_211684019.1    Uniprot ID   -
Organism   Moritella sp. 24     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4433201..4443818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV00_RS19800 (HWV00_19800) - 4433201..4433545 (-) 345 WP_211684012.1 MSHA biogenesis protein MshK -
  HWV00_RS19805 (HWV00_19805) - 4433538..4434356 (-) 819 WP_255554842.1 glucose-6-phosphate isomerase -
  HWV00_RS19810 (HWV00_19810) - 4434356..4434955 (-) 600 WP_211684014.1 PilN domain-containing protein -
  HWV00_RS19815 (HWV00_19815) - 4434952..4435848 (-) 897 WP_211684016.1 biogenesis protein MshI -
  HWV00_RS19820 (HWV00_19820) - 4435998..4437914 (-) 1917 WP_211684018.1 EAL domain-containing protein -
  HWV00_RS19825 (HWV00_19825) ssb 4438201..4438818 (-) 618 WP_211684019.1 single-stranded DNA-binding protein Machinery gene
  HWV00_RS19830 (HWV00_19830) - 4438820..4440193 (-) 1374 WP_211684021.1 MFS transporter -
  HWV00_RS19835 (HWV00_19835) - 4440706..4441344 (+) 639 WP_211684023.1 LuxR C-terminal-related transcriptional regulator -
  HWV00_RS19840 (HWV00_19840) - 4441555..4443729 (+) 2175 WP_211684025.1 polysaccharide biosynthesis tyrosine autokinase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 22637.59 Da        Isoelectric Point: 4.9269

>NTDB_id=458300 HWV00_RS19825 WP_211684019.1 4438201..4438818(-) (ssb) [Moritella sp. 24]
MASRGVNKVIILGNLGNDPEIRSFPNGGAVANLTIATSESWRDKQTGEQREKTEWHRVAVFGKLAEIAGEYLRKGSQVYI
EGALQTRKWQDQNGQDRFTTEVVVQGFNGVMQMIGSRQGGQQQQGGGYNNNNQQQNQNAGWGQPQQPAAPQQQQGGYNQQ
PQQQQAPQQQSYAPQQQTPAPAPQQQAPQQGFNEPSADFDDDIPF

Nucleotide


Download         Length: 618 bp        

>NTDB_id=458300 HWV00_RS19825 WP_211684019.1 4438201..4438818(-) (ssb) [Moritella sp. 24]
ATGGCCAGTCGTGGCGTAAATAAAGTAATTATTCTTGGTAATTTAGGTAATGATCCTGAAATCCGCTCATTTCCAAATGG
TGGCGCGGTTGCCAATCTAACAATTGCGACAAGTGAGTCATGGCGTGATAAGCAAACTGGCGAACAGCGTGAGAAAACTG
AATGGCACCGTGTTGCTGTATTCGGTAAACTAGCTGAAATTGCTGGTGAATACTTACGTAAAGGTTCACAGGTATATATT
GAAGGCGCATTACAAACGCGTAAATGGCAAGATCAAAATGGTCAAGACCGTTTCACCACTGAAGTTGTAGTACAAGGCTT
TAACGGTGTGATGCAAATGATCGGTTCTCGTCAAGGTGGTCAACAGCAGCAAGGTGGTGGTTATAACAATAATAACCAAC
AACAAAACCAAAATGCAGGTTGGGGTCAACCACAACAGCCAGCAGCACCACAGCAACAACAAGGTGGTTATAACCAACAA
CCACAGCAACAACAGGCGCCTCAGCAACAAAGTTATGCTCCACAACAGCAAACTCCTGCTCCAGCACCTCAACAACAAGC
TCCGCAACAAGGTTTCAACGAACCTTCTGCAGATTTTGATGATGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

63.768

100

0.644
  ssb Glaesserella parasuis strain SC1401

51.741

98.049

0.507
  ssb Neisseria meningitidis MC58

40

100

0.4
  ssb Neisseria gonorrhoeae MS11

39

97.561

0.38