Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   JJN14_RS08485 Genome accession   NZ_CP067992
Coordinates   1711455..1713821 (+) Length   788 a.a.
NCBI ID   WP_201058417.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1706455..1718821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS08460 (JJN14_08460) mutS/mutS2 1706463..1708799 (-) 2337 WP_201058415.1 endonuclease MutS2 Machinery gene
  JJN14_RS08465 (JJN14_08465) - 1708903..1709451 (-) 549 WP_115904881.1 CvpA family protein -
  JJN14_RS08470 (JJN14_08470) zapA 1709448..1709750 (-) 303 WP_000002019.1 cell division protein ZapA -
  JJN14_RS08475 (JJN14_08475) rnhC 1709837..1710718 (+) 882 WP_201058416.1 ribonuclease HIII -
  JJN14_RS08480 (JJN14_08480) lepB 1710722..1711336 (+) 615 WP_049486944.1 signal peptidase I -
  JJN14_RS08485 (JJN14_08485) recD/recD2/recDB 1711455..1713821 (+) 2367 WP_201058417.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JJN14_RS08490 (JJN14_08490) tig 1713869..1715152 (-) 1284 WP_045612235.1 trigger factor -
  JJN14_RS08495 (JJN14_08495) vraR 1715313..1715945 (-) 633 WP_049509719.1 response regulator transcription factor Regulator
  JJN14_RS08500 (JJN14_08500) - 1715956..1716954 (-) 999 WP_201058418.1 sensor histidine kinase -
  JJN14_RS08505 (JJN14_08505) liaF 1716951..1717649 (-) 699 WP_070528777.1 cell wall-active antibiotics response protein LiaF -
  JJN14_RS08510 (JJN14_08510) fni 1717726..1718736 (-) 1011 WP_201058419.1 type 2 isopentenyl-diphosphate Delta-isomerase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88359.14 Da        Isoelectric Point: 4.5779

>NTDB_id=458256 JJN14_RS08485 WP_201058417.1 1711455..1713821(+) (recD/recD2/recDB) [Streptococcus mitis strain S022-V7-A3]
MEFYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGKQLQISRYERA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGDNTIDEILQHPEKLGSIAGLSAKNREAFVSTLRLNYGTEMVLSKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACMGTGDTYVEA
RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKQKSHDLETIQKH
ITTVEEELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSSSKILIVGDSDQLPSVSPGQVLAD
LLHIPLIPQTRLEKIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPPQKDQVSFEAPQCHYRKGDKVIHLVNDAEINVFNGDLGTITDLIPGKYTESKQDEI
VIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDYATQ
HIGTARKTYLIERFSDLLENVEEKQQAVSETVTSSTSEQSYILTEENWDSIPAMIGITDVDLKEIFGK

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=458256 JJN14_RS08485 WP_201058417.1 1711455..1713821(+) (recD/recD2/recDB) [Streptococcus mitis strain S022-V7-A3]
ATGGAATTTTATTTTTCAGGAACCATTGAACGGATTATTTTTGAAAATCCCAGCAATTTTTACCGCATCCTCCTCCTAGA
AATTGACGATACGGACGCAGAGGATTTTGATGATTTTGAAATCATTGTCACGGGTACCATGGCTGACGTGATTGAGGGAG
AAGACTATACTTTTTGGGGGCAAATTGTACAGCACTCCAAGTATGGGAAGCAACTGCAAATCAGCCGGTATGAACGCGCA
AAACCAACTAGTAAAGGGCTGGTTAAGTACTTTTCAAGTAGCCATTTCAAGGGAATTGGTCTCAAGACAGCTCAGAAAAT
TGTGGATACCTATGGCGACAATACCATTGACGAAATTCTGCAACACCCAGAAAAGCTAGGAAGCATCGCAGGACTATCTG
CCAAAAATCGCGAGGCTTTCGTCTCCACTCTCCGTCTCAACTACGGAACCGAGATGGTTTTGTCCAAACTAGCCAACTAC
GGCATTCCCAATAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACTCTTGATGTGGTTGAAAATTATCCCTA
CCAATTGGTTGAGGATATCAAGGGTTTAGGCTTTACTATTGCTGACCAATTAGCGGAAGAACTCGGCATCGAAAGTCAGG
CTCCTGAGCGCTTTCGTGCCGGTCTAGTTCACAGTCTTTTTCAGGCCTGTATGGGAACAGGGGACACCTATGTTGAAGCA
CGGGATTTGCTGGAACAAACCCTTACTCTCCTTGAATCTTCCCGTCCCGTGGAACTGGATCCTAGCCAAGTAGCCCAAGA
ACTCTCCTACCTGATCGAAGAAGACAAGGTTCAGCAGATTGATACAAAAATCTTTGATAACAGCCTCTTTTTCGCTGAGG
AAGGCATCCGCAGTCACTTGGTTCGTATCCTTGAAAAAGGAAAACAGAAGAGCCATGATTTAGAAACTATTCAAAAGCAT
ATCACTACTGTCGAGGAAGAACTGGGAATTGAGTATGATAACATTCAAAAACAAGCTATTTGTGATGCTATCCAGAACAA
GGTCTTTATCCTAACAGGTGGACCTGGTACTGGTAAGACAACGGTTATCAATGGGATCATCGCTGTTTATGCCCTTTTAG
AAGGACTTGACCTCAGGAAAAAAAGCAATCTGCCGATTCTTCTTGCTGCTCCAACTGGCCGAGCAGCTCGGCGCATGAAT
GAATTGACAGGTTTGCCTAGTGCTACCATACACCGCCATTTGGGAATGACAGGGGACGATGATACCAGTCATCTGGAAGA
TTATCTGGATGCTGACTTTATCATCGTAGATGAATTTTCCATGGTGGATACTTGGCTGGCCAACCAACTCTTCTCCAACA
TCTCTTCTAGCAGTAAAATCCTCATCGTGGGTGACAGCGACCAACTACCGTCTGTCAGCCCTGGACAGGTTCTAGCGGAT
CTGCTTCATATTCCCTTGATTCCTCAGACTCGTTTGGAAAAAATTTACCGACAAAGCGAAGAATCAACCATCGTCACTCT
AGCTAGTCAGATTCGACAGGGCATCTTGCCAGCTGACTTTACCCAGAAAAAAGCAGACCGTTCCTACTTTGAAATTGCTA
GCGGCCATATTCCAGCTACGATTGAAAAAATCTTAGGCGCTGCCCTAAGAAGTGGTATCCCTGCCCGTGATATCCAAGTT
CTGGCTCCCATGTACCGAGGAACAGCAGGGATTGATGCCATCAACCAACTCATGCAAGACCTGCTTAATCCACCACAAAA
AGACCAAGTCAGTTTTGAAGCTCCCCAGTGCCACTATCGTAAGGGCGACAAGGTCATTCACTTGGTCAATGATGCTGAAA
TCAATGTCTTTAATGGAGATTTAGGAACTATCACAGACCTGATTCCTGGTAAATACACCGAGTCGAAACAAGACGAAATT
GTCATTGATTTTGATGGCAACGAGGTCTCTTACCCACGTAACGAATGGTACAAGATTCGCCTGGCCTATGCCATGAGTAT
CCATAAGTCCCAGGGAAGTGAGTTCCCTGTTGTCATCCTACCTATCACTAGTGCTAGTAGGCGTATGCTGGAGCGCAATC
TCATCTATACAGCCATTACACGCGCCAAAAGCAAGCTTATCTTACTAGGCGAATTACAGGCCTTCGACTATGCCACCCAG
CATATCGGAACTGCCCGAAAAACCTATCTGATTGAACGCTTCAGTGATTTATTGGAGAATGTTGAAGAAAAGCAACAAGC
GGTCTCTGAAACAGTCACATCAAGTACCTCTGAACAATCCTACATCTTAACCGAAGAAAACTGGGACAGCATCCCCGCCA
TGATTGGGATTACAGACGTAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(332-520)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

40.503

100

0.409