Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HWV01_RS00975 Genome accession   NZ_CP056122
Coordinates   204042..204677 (+) Length   211 a.a.
NCBI ID   WP_211673670.1    Uniprot ID   -
Organism   Moritella sp. 5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 199042..209677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV01_RS00960 (HWV01_00955) - 199106..201289 (-) 2184 WP_211673667.1 polysaccharide biosynthesis tyrosine autokinase -
  HWV01_RS00965 (HWV01_00960) - 201515..202153 (-) 639 WP_211673668.1 LuxR C-terminal-related transcriptional regulator -
  HWV01_RS00970 (HWV01_00965) - 202667..204040 (+) 1374 WP_211673669.1 MFS transporter -
  HWV01_RS00975 (HWV01_00970) ssb 204042..204677 (+) 636 WP_211673670.1 single-stranded DNA-binding protein Machinery gene
  HWV01_RS00980 (HWV01_00975) - 204945..206858 (+) 1914 WP_211673671.1 EAL domain-containing protein -
  HWV01_RS00985 (HWV01_00980) pilM 207010..207903 (+) 894 WP_211673672.1 type IV pilus biogenesis protein PilM -
  HWV01_RS00990 (HWV01_00985) - 207903..208502 (+) 600 WP_211673673.1 PilN domain-containing protein -
  HWV01_RS00995 (HWV01_00990) - 208499..209302 (+) 804 WP_211673674.1 glucose-6-phosphate isomerase -
  HWV01_RS01000 (HWV01_00995) - 209295..209639 (+) 345 WP_211673675.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23318.35 Da        Isoelectric Point: 5.2358

>NTDB_id=458256 HWV01_RS00975 WP_211673670.1 204042..204677(+) (ssb) [Moritella sp. 5]
MASRGVNKVIILGNLGNDPEIRSFPNGGAVANLTIATSESWRDKQTGEQREKTEWHRVAVFGKLAEIAGEYLRKGSQVYI
EGALQTRKWQDQNGQDRFTTEVVVQGFNGVMQMIGSRQGGQQQQGGGYNNSNQQPQQQQNQNAGWGQPQQPAAAPQQQGG
YNQQPQQQQPQQQQQQSYAPKQQAPAPAPQQQAPQQGFNEPSADFDDDIPF

Nucleotide


Download         Length: 636 bp        

>NTDB_id=458256 HWV01_RS00975 WP_211673670.1 204042..204677(+) (ssb) [Moritella sp. 5]
ATGGCCAGTCGTGGCGTAAATAAAGTAATTATTCTTGGTAATTTAGGTAATGATCCTGAAATCCGCTCATTTCCAAATGG
TGGCGCGGTTGCCAATCTAACGATTGCGACAAGTGAATCATGGCGTGATAAGCAAACTGGTGAACAGCGCGAAAAAACTG
AATGGCACCGCGTTGCGGTATTCGGTAAATTAGCTGAAATTGCGGGTGAATACTTACGTAAAGGATCTCAGGTATATATT
GAAGGCGCATTACAAACACGTAAATGGCAAGATCAAAATGGCCAAGATCGTTTTACAACAGAAGTTGTAGTACAAGGTTT
TAACGGTGTAATGCAAATGATTGGTTCGCGTCAAGGCGGTCAGCAGCAGCAGGGCGGCGGTTATAATAATAGTAACCAAC
AGCCACAGCAACAGCAGAACCAAAATGCTGGTTGGGGTCAGCCACAACAGCCAGCAGCGGCACCACAACAACAAGGCGGT
TATAACCAACAGCCACAGCAACAACAACCACAGCAACAGCAACAGCAAAGCTATGCTCCTAAACAGCAAGCTCCTGCTCC
AGCGCCTCAACAGCAAGCGCCGCAGCAAGGTTTTAACGAACCGTCTGCAGACTTTGATGATGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

61.972

100

0.626
  ssb Glaesserella parasuis strain SC1401

51.442

98.578

0.507
  ssb Neisseria meningitidis MC58

40.291

97.63

0.393
  ssb Neisseria gonorrhoeae MS11

40.291

97.63

0.393