Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SA190iCDA_RS05725 Genome accession   NZ_CP056087
Coordinates   1267739..1269076 (-) Length   445 a.a.
NCBI ID   WP_070884486.1    Uniprot ID   A0A1I3I0Q8
Organism   Pseudomonas argentinensis strain SA190     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1262739..1274076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA190iCDA_RS05690 - 1263458..1264021 (-) 564 WP_070884491.1 pilus assembly PilX family protein -
  SA190iCDA_RS05695 - 1264018..1264800 (-) 783 WP_236101031.1 PilW family protein -
  SA190iCDA_RS05700 pilV 1264810..1265358 (-) 549 WP_070884489.1 type IV pilus modification protein PilV -
  SA190iCDA_RS23225 - 1265355..1265846 (-) 492 WP_070884488.1 GspH/FimT family pseudopilin -
  SA190iCDA_RS05715 - 1265966..1266472 (-) 507 WP_083329723.1 GspH/FimT family pseudopilin -
  SA190iCDA_RS05720 thiO 1266568..1267677 (+) 1110 WP_070884487.1 glycine oxidase ThiO -
  SA190iCDA_RS05725 pilR 1267739..1269076 (-) 1338 WP_070884486.1 sigma-54-dependent transcriptional regulator Regulator
  SA190iCDA_RS05730 pilS 1269085..1270677 (-) 1593 WP_070884485.1 sensor histidine kinase Regulator
  SA190iCDA_RS05735 - 1270667..1270912 (-) 246 WP_070884484.1 PP0621 family protein -
  SA190iCDA_RS05740 - 1271058..1272050 (-) 993 WP_070884483.1 outer membrane protein assembly factor BamD -
  SA190iCDA_RS05745 rluD 1272198..1273172 (+) 975 WP_070884482.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SA190iCDA_RS05750 pgeF 1273169..1273909 (+) 741 WP_070884481.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49514.88 Da        Isoelectric Point: 6.2854

>NTDB_id=458118 SA190iCDA_RS05725 WP_070884486.1 1267739..1269076(-) (pilR) [Pseudomonas argentinensis strain SA190]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAKEPFDLCLTDMRLPDGSGLDIVQHIQQRHPQTPVAM
ITAFGSVDTAINALKAGAFDFLTKPVDLGRLRELVNTALRLHAAEEGEAPGSSRLLGESPPMRALRGQIQKLARSQAPVY
ISGESGSGKELVARLIHEQGPRRERAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGSLFLDEVADLP
LTMQVKLLRAIQEKAIRAVGGQQEVVVDTRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADVM
LKRLNEGIGLPPVKLDGPALEKLKSYRFPGNVRELENMLERAYTLCEGDVICANDLRLADAAPAGENGDASLAQIDNIED
YLEDVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=458118 SA190iCDA_RS05725 WP_070884486.1 1267739..1269076(-) (pilR) [Pseudomonas argentinensis strain SA190]
ATGAATCGCCAGAGAGCCCTGATTGTCGACGACGAACCCGATATCCGCGAACTGCTGGAGATCACCCTCGGGCGCATGAA
ACTCGACACCCGCAGCGCCCGCAACGTCAAGGAAGCACGCGAGTGGCTGGCCAAGGAGCCGTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCAGCGGCCTGGACATCGTGCAGCATATCCAGCAGCGCCATCCGCAAACGCCGGTGGCGATG
ATCACCGCGTTCGGCAGCGTCGACACGGCGATCAACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAGCCGGTCGA
CCTGGGCCGCCTGCGCGAACTGGTGAACACCGCCCTGCGCCTGCATGCCGCCGAGGAAGGCGAAGCACCGGGCAGCAGCC
GCCTGCTGGGCGAGTCGCCACCGATGCGCGCGCTGCGCGGGCAGATCCAGAAGCTCGCGCGCAGCCAGGCGCCGGTGTAC
ATCAGCGGGGAGTCGGGCAGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGCCCGCGCCGCGAGCGTGCCTT
CGTGCCGGTCAACTGCGGCGCGATTCCCTCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCG
GCGCCGTCGAAGACAAACAGGGCCTGTTCCAGGCCGCCAATGGCGGCAGCCTGTTCCTCGATGAAGTGGCCGACCTGCCG
CTGACCATGCAGGTCAAGCTGCTGCGCGCCATTCAGGAAAAGGCCATCCGCGCCGTTGGCGGCCAGCAGGAAGTGGTGGT
CGACACCCGCATCCTCTGCGCCACCCACAAGGACCTGGCCGCCGAAGTGGCGGCCGGCCGCTTCCGCCAGGATCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAGCGCCGCGAGGACATTCCCCTGCTGGCCGACGTGATG
CTCAAGCGCCTCAACGAAGGCATCGGCCTGCCACCGGTCAAGCTCGACGGCCCGGCGCTGGAGAAGCTCAAGAGCTACCG
CTTCCCCGGCAACGTGCGCGAATTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGGCGACGTGATCTGCGCCA
ACGACCTGCGCCTGGCGGACGCCGCGCCGGCTGGTGAGAACGGCGACGCCAGCCTGGCGCAGATCGACAATATCGAGGAT
TACCTGGAAGACGTCGAACGCAAGCTGATCATGCAGGCCCTGGAAGAAACCCGCTGGAACCGCACGGCAGCAGCGCAGCG
CCTGGGCCTGAGCTTCCGCTCGATGCGCTATCGCCTCAAGAAACTGGGCATCGACTGA

Domains

Predicted by InterProScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

86.292

100

0.863
  pilR Acinetobacter baumannii strain A118

50.109

100

0.517
  luxO Vibrio cholerae strain A1552

36.996

100

0.371