Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SA190iCDA_RS05730 Genome accession   NZ_CP056087
Coordinates   1269085..1270677 (-) Length   530 a.a.
NCBI ID   WP_070884485.1    Uniprot ID   -
Organism   Pseudomonas argentinensis strain SA190     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1264085..1275677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA190iCDA_RS05700 pilV 1264810..1265358 (-) 549 WP_070884489.1 type IV pilus modification protein PilV -
  SA190iCDA_RS23225 - 1265355..1265846 (-) 492 WP_070884488.1 GspH/FimT family pseudopilin -
  SA190iCDA_RS05715 - 1265966..1266472 (-) 507 WP_083329723.1 GspH/FimT family pseudopilin -
  SA190iCDA_RS05720 thiO 1266568..1267677 (+) 1110 WP_070884487.1 glycine oxidase ThiO -
  SA190iCDA_RS05725 pilR 1267739..1269076 (-) 1338 WP_070884486.1 sigma-54-dependent transcriptional regulator Regulator
  SA190iCDA_RS05730 pilS 1269085..1270677 (-) 1593 WP_070884485.1 sensor histidine kinase Regulator
  SA190iCDA_RS05735 - 1270667..1270912 (-) 246 WP_070884484.1 PP0621 family protein -
  SA190iCDA_RS05740 - 1271058..1272050 (-) 993 WP_070884483.1 outer membrane protein assembly factor BamD -
  SA190iCDA_RS05745 rluD 1272198..1273172 (+) 975 WP_070884482.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SA190iCDA_RS05750 pgeF 1273169..1273909 (+) 741 WP_070884481.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58455.77 Da        Isoelectric Point: 9.4436

>NTDB_id=458119 SA190iCDA_RS05730 WP_070884485.1 1269085..1270677(-) (pilS) [Pseudomonas argentinensis strain SA190]
MPNSALAVRGPQGHRIFRLYHLYRLVIGVVLVLLVSANLDSELLELAHVPLFRGASWVYLTLNILIALTIHTPDRLLPVF
AVALGDVMLLSALFYAGGGTPSGIGNLLIVSVAIANILLRGRFGVLIAAAAAIGMIYLTFYLSLNHPQASSQYVQVGALG
ALCFAAALFVQGLTRRLQVSERLAEQRAADVADLETLNNLILQRMRTGILVVDEQRRVLLANQAALGLLGQQNLAGKILD
PHCTELVKRLQHWQENSSLRPASLQTLSDGPTLQPSFIALQRGGQRHILILLDDISQIAQQAQQLKLVALGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLHGPDQRLAQIIQDHSRRMNLIIENVLQLSRRRQAEPQLLDLKYWLHRFAAEFRSTAPAS
KVLHLAIEGSSIQTRMDPNQLNQVITNLVQNGLRHSAKLNPKGQVWLKLFRDPRSDLPVLEVLDDGAGVPADQLHHIFEP
FYTTENKGTGLGLYISRELCESNQAHLHYQPREGGGACFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=458119 SA190iCDA_RS05730 WP_070884485.1 1269085..1270677(-) (pilS) [Pseudomonas argentinensis strain SA190]
GTGCCCAATAGCGCCCTCGCGGTACGAGGCCCCCAGGGGCATCGTATCTTCCGGCTGTACCACCTCTACCGCCTGGTCAT
CGGCGTGGTGCTGGTGCTGCTGGTGTCGGCCAACCTCGACTCCGAGTTGCTGGAGCTGGCCCACGTGCCGCTGTTTCGCG
GCGCCAGCTGGGTCTACCTGACGCTCAACATCCTGATCGCGCTGACCATCCATACGCCCGATCGCCTGCTGCCGGTATTC
GCCGTGGCGCTGGGCGACGTGATGCTGCTCTCGGCGCTGTTCTACGCAGGGGGCGGCACGCCGAGCGGCATCGGCAACCT
GCTGATCGTCTCCGTGGCGATCGCCAACATCCTGCTGCGCGGTCGCTTCGGCGTACTGATCGCCGCTGCCGCCGCGATCG
GCATGATCTACCTGACCTTCTACCTGAGCCTCAACCACCCCCAGGCCAGCAGCCAGTATGTGCAGGTCGGTGCACTGGGC
GCGCTGTGCTTCGCTGCGGCACTGTTCGTACAGGGCCTGACCCGGCGCCTGCAGGTCAGTGAGAGACTGGCCGAACAACG
CGCCGCCGACGTCGCGGACCTGGAAACCCTCAACAACCTGATCCTGCAGCGCATGCGCACCGGCATTCTGGTGGTGGACG
AACAGCGCCGCGTGCTGCTGGCCAACCAGGCGGCGCTGGGCTTGCTGGGCCAGCAGAACCTGGCGGGCAAGATTCTTGAC
CCGCACTGCACCGAGCTGGTCAAGCGCTTGCAACACTGGCAGGAAAACAGCAGCCTGCGCCCGGCCAGCCTGCAGACGCT
CAGCGACGGCCCGACCCTGCAGCCCAGCTTCATCGCGCTGCAGCGCGGCGGCCAGCGGCATATCCTGATCCTGCTCGACG
ACATCTCGCAGATCGCCCAGCAGGCCCAGCAACTCAAGCTGGTGGCCCTCGGCCGACTGACCGCCGGCATCGCCCACGAG
ATTCGCAACCCCCTGGGCGCCATCAGCCATGCGGCGCAGCTGCTGCAGGAGTCCGAAGACCTGCACGGGCCGGATCAGCG
CCTGGCGCAGATCATCCAGGACCACTCGCGGCGCATGAACCTGATCATCGAGAACGTGCTGCAGCTGTCACGGCGCCGCC
AGGCCGAGCCGCAACTGCTCGACCTCAAGTACTGGCTGCACCGTTTCGCCGCCGAGTTCCGCAGCACCGCCCCGGCCTCC
AAGGTGCTGCACCTGGCCATCGAAGGCAGCAGCATCCAGACGCGCATGGACCCCAACCAGCTCAACCAGGTCATCACCAA
TCTGGTACAGAACGGCCTGCGCCACAGCGCCAAGCTCAACCCCAAGGGCCAGGTGTGGCTGAAGCTGTTTCGCGACCCGC
GCAGCGATCTGCCGGTGCTCGAGGTACTCGATGACGGCGCCGGGGTGCCGGCAGACCAACTGCATCACATCTTCGAGCCG
TTCTATACCACGGAGAACAAAGGCACCGGCCTGGGCCTGTATATTTCCCGCGAGCTTTGCGAAAGCAACCAGGCTCATCT
TCACTATCAACCACGCGAAGGCGGCGGCGCCTGCTTCCGTATCACCTTCGCGCATCCGCGAAAACTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.089

97.925

0.647