Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SA190iCDA_RS00630 Genome accession   NZ_CP056087
Coordinates   134703..136874 (-) Length   723 a.a.
NCBI ID   WP_070885973.1    Uniprot ID   -
Organism   Pseudomonas argentinensis strain SA190     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 129703..141874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA190iCDA_RS00615 - 131393..133015 (-) 1623 WP_070885975.1 AAA family ATPase -
  SA190iCDA_RS00620 aroB 133023..134129 (-) 1107 WP_070885974.1 3-dehydroquinate synthase -
  SA190iCDA_RS00625 aroK 134181..134699 (-) 519 WP_027903890.1 shikimate kinase AroK -
  SA190iCDA_RS00630 pilQ 134703..136874 (-) 2172 WP_070885973.1 type IV pilus secretin PilQ Machinery gene
  SA190iCDA_RS00635 pilP 136929..137447 (-) 519 WP_070885972.1 type 4a pilus biogenesis lipoprotein PilP -
  SA190iCDA_RS00640 pilO 137444..138067 (-) 624 WP_070885971.1 type 4a pilus biogenesis protein PilO -
  SA190iCDA_RS00645 - 138064..138636 (-) 573 WP_070885970.1 PilN domain-containing protein -
  SA190iCDA_RS00650 pilM 138636..139700 (-) 1065 WP_070885969.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 723 a.a.        Molecular weight: 77318.40 Da        Isoelectric Point: 4.6654

>NTDB_id=458109 SA190iCDA_RS00630 WP_070885973.1 134703..136874(-) (pilQ) [Pseudomonas argentinensis strain SA190]
MNSSLSRLSLSLLVALLSPAALAANLQALDVAALPGDRVELKLSFDEPVAAPRGYTIEQPARIALDLPGVSNKLGVKNRE
LGMGNARSVTVVEAKDRTRLIINLTNLSPYNTRTEGNNLFVQVGTGVATSATATAAAPVSAPAPAAARPAQAATPVAAPA
APKVFGAVNKSISNIDFQRGEQGEGNVVINLSDASVSPDIQERGGKIILNFNRTQLPEALRVRLDVKDFATPVQFVSASG
TGDDASIVIEPVGAFDYLAYQTENKLTLSVKPLTQEDADKRQAERFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVAS
DTVAGNITLRLQNVPWDQALDLVLKTKGLDKRQVGNVLLVAPAEEIAARERQELESQKQIAELAPLRRELIQVNYAKAED
MAKLFQSVTSADGGVPDDRGSITVDERTNSIIAYQTQERLDELRRIVAQLDVAVRQVMIEARIVEANVNYSKALGVRWGG
TLGNAGSRWRAYGKDGNLGIEEDGVGNCGPFAGSCSRPTTEDGNSPVPFVDMGVQGSTSGIGIGFITNSAIIDLQLSAME
SSGNGEVVSQPKVVTSDKETAKILKGQEIPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVNKDAPDYQNEL
NGVPPISKNEVNAKVLVSDGETIVIGGVFENTQTKATEKVPFLGDVPYLGRLFRRDIVNDNKTELLVFITPRIMNTSAVA
VSQ

Nucleotide


Download         Length: 2172 bp        

>NTDB_id=458109 SA190iCDA_RS00630 WP_070885973.1 134703..136874(-) (pilQ) [Pseudomonas argentinensis strain SA190]
ATGAACAGCTCTCTCTCTCGCCTAAGCCTCTCGCTGCTGGTGGCACTGCTCTCTCCTGCCGCTCTGGCCGCCAACCTGCA
GGCGCTGGATGTGGCGGCTCTGCCGGGCGACCGTGTCGAGCTGAAACTGTCCTTCGATGAGCCGGTGGCGGCGCCGCGCG
GCTATACCATCGAGCAGCCGGCGCGTATCGCACTGGATCTGCCCGGCGTGTCCAACAAGCTGGGTGTGAAGAACCGCGAG
CTGGGCATGGGCAACGCGCGCAGTGTCACCGTGGTCGAGGCCAAGGATCGCACGCGGCTGATCATCAACCTGACCAACCT
GTCGCCCTACAACACCCGCACCGAAGGCAACAACCTGTTCGTGCAGGTCGGTACCGGCGTGGCCACATCGGCAACCGCCA
CGGCAGCGGCGCCGGTGAGCGCGCCTGCGCCAGCGGCGGCCCGTCCTGCTCAGGCGGCAACGCCAGTTGCGGCGCCGGCA
GCGCCCAAGGTATTCGGCGCCGTCAACAAGTCGATCAGCAATATCGACTTCCAGCGCGGCGAGCAGGGCGAGGGCAATGT
CGTCATCAACCTGTCCGATGCGTCTGTCAGCCCTGATATTCAGGAGCGTGGCGGCAAGATCATCCTCAATTTCAACCGCA
CCCAGCTGCCCGAGGCCCTGCGTGTGCGCCTGGACGTCAAGGACTTCGCCACCCCGGTGCAGTTCGTCAGTGCCAGCGGT
ACTGGCGACGACGCCAGTATTGTGATCGAGCCGGTAGGGGCCTTCGATTACCTGGCCTACCAGACCGAGAACAAGCTGAC
CCTCAGCGTCAAGCCGCTGACCCAGGAAGATGCCGACAAGCGTCAGGCCGAGCGTTTCGCCTATACCGGCGAGAAGCTGT
CGCTGAACTTCCAGGATATCGACGTGCGTTCGGTGCTGCAGCTGATCGCCGATTTCACCGATTTGAACCTGGTCGCCAGT
GACACGGTGGCGGGCAATATCACCCTGCGTCTGCAGAACGTGCCGTGGGACCAGGCGCTGGATCTGGTGCTCAAGACCAA
AGGCCTCGACAAGCGTCAGGTCGGCAACGTGCTGCTGGTCGCGCCGGCGGAAGAGATTGCCGCCCGTGAGCGTCAGGAGC
TGGAGTCGCAGAAGCAGATCGCCGAACTGGCCCCGCTGCGCCGTGAGCTGATTCAGGTCAACTACGCCAAGGCCGAGGAT
ATGGCCAAGTTGTTCCAGTCGGTGACCAGTGCTGATGGTGGCGTACCGGACGATCGCGGGTCCATCACGGTCGATGAGCG
CACCAATAGCATCATCGCTTATCAGACTCAGGAGCGGCTGGACGAGCTGCGCCGTATCGTGGCGCAGCTCGATGTGGCGG
TGCGTCAGGTGATGATCGAGGCGCGTATTGTTGAGGCCAATGTGAATTACAGCAAGGCGCTTGGTGTGCGCTGGGGCGGT
ACCCTCGGTAATGCGGGGTCCAGATGGCGCGCTTATGGTAAGGATGGAAATCTGGGGATCGAGGAGGATGGTGTAGGTAA
CTGCGGCCCCTTCGCAGGAAGCTGCTCTCGACCAACCACCGAAGACGGCAATTCACCGGTTCCTTTCGTAGACATGGGCG
TTCAGGGCAGCACATCTGGCATTGGCATTGGCTTTATCACCAACAGCGCCATTATCGATCTGCAGCTTTCAGCCATGGAG
AGTTCGGGCAACGGCGAAGTCGTTTCTCAGCCTAAGGTGGTTACCTCGGATAAGGAAACCGCAAAAATTCTGAAAGGCCA
GGAAATTCCGTACCAGGAGGCTAGTTCCAGCGGTGCGACAAGCACATCGTTCAAAGAGGCAGCTTTGTCTCTTGAGGTGA
CTCCGCAAATTACCCCGGACAATCGCATCATCATGGAAGTAAAAGTCAATAAGGATGCGCCTGACTATCAGAACGAATTG
AACGGAGTTCCACCGATTAGCAAGAACGAAGTCAATGCTAAAGTTCTGGTATCTGATGGTGAGACGATCGTGATTGGTGG
CGTGTTCGAGAATACTCAGACGAAAGCAACCGAGAAGGTGCCTTTCCTTGGTGATGTACCTTACTTGGGGCGCTTGTTCC
GACGCGACATCGTCAATGACAACAAGACCGAGTTGCTGGTTTTCATCACTCCGCGCATCATGAACACTTCTGCGGTGGCT
GTGAGCCAGTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(558-714)

Secretin and TonB N terminus short domain (STN)

(316-362)

Bacterial type II/III secretion system short domain (Secretin_N)

(390-456)

AMIN domain (AMIN)

(38-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

75.172

100

0.754
  pilQ Acinetobacter baumannii strain A118

38.039

100

0.402
  pilQ Acinetobacter baumannii D1279779

38.039

100

0.402
  comQ Acinetobacter baylyi ADP1

39.834

100

0.398