Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HED12_RS08495 Genome accession   NZ_CP056077
Coordinates   1636830..1637366 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain MS1170     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1631830..1642366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HED12_RS08475 (HED12_08460) soxR 1633559..1634023 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  HED12_RS08480 (HED12_08465) soxS 1634109..1634432 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HED12_RS08485 (HED12_08470) pdeC 1634468..1636021 (-) 1554 WP_021530927.1 c-di-GMP phosphodiesterase PdeC -
  HED12_RS08490 (HED12_08475) yjcB 1636450..1636731 (+) 282 WP_001298294.1 YjcB family protein -
  HED12_RS08495 (HED12_08480) ssb 1636830..1637366 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HED12_RS08500 (HED12_08485) uvrA 1637621..1640443 (+) 2823 WP_202791743.1 excinuclease ABC subunit UvrA -
  HED12_RS08505 (HED12_08490) yjbR 1640478..1640834 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HED12_RS08510 (HED12_08495) yjbQ 1640838..1641254 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HED12_RS08515 (HED12_08500) aphA 1641365..1642078 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=458082 HED12_RS08495 WP_000168305.1 1636830..1637366(-) (ssb) [Escherichia coli strain MS1170]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=458082 HED12_RS08495 WP_000168305.1 1636830..1637366(-) (ssb) [Escherichia coli strain MS1170]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTTGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489