Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   C663_RS13395 Genome accession   NC_020244
Coordinates   2673466..2674161 (-) Length   231 a.a.
NCBI ID   WP_015384272.1    Uniprot ID   -
Organism   Bacillus subtilis XF-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2668466..2679161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS13370 (C663_2641) minD 2669402..2670208 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  C663_RS13375 (C663_2642) minC 2670210..2670890 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  C663_RS13380 (C663_2643) mreD 2670943..2671461 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  C663_RS13385 (C663_2644) mreC 2671458..2672330 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  C663_RS13390 (C663_2645) mreB 2672361..2673374 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C663_RS13395 (C663_2646) ysxA/radC 2673466..2674161 (-) 696 WP_015384272.1 DNA repair protein RadC Machinery gene
  C663_RS13400 (C663_2647) maf 2674198..2674767 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  C663_RS13405 (C663_2648) spoIIB 2674920..2675918 (-) 999 WP_015384273.1 stage II sporulation protein SpoIIB -
  C663_RS13410 (C663_2649) comC 2676052..2676798 (-) 747 WP_015384274.1 A24 family peptidase Machinery gene
  C663_RS13415 (C663_2650) folC 2676938..2678230 (-) 1293 WP_015384275.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26142.47 Da        Isoelectric Point: 7.9285

>NTDB_id=45808 C663_RS13395 WP_015384272.1 2673466..2674161(-) (ysxA/radC) [Bacillus subtilis XF-1]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTIFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=45808 C663_RS13395 WP_015384272.1 2673466..2674161(-) (ysxA/radC) [Bacillus subtilis XF-1]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGAGAACGGCTTCTGAAAGTCGG
AGCCGAGAACTTAGCGAACCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGATGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCATATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATTTGTGTTCATAATCATCCTTCTGGAGATCC
GACACCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.134

100

0.991
  radC Streptococcus pneumoniae TIGR4

48.571

90.909

0.442
  radC Streptococcus pneumoniae R6

48.095

90.909

0.437
  radC Streptococcus pneumoniae D39

48.095

90.909

0.437
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429

Multiple sequence alignment