Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AVCG678_RS07305 Genome accession   NZ_CP056042
Coordinates   1525722..1526252 (+) Length   176 a.a.
NCBI ID   WP_015916118.1    Uniprot ID   B9JWR9
Organism   Agrobacterium vitis strain CG678     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1520722..1531252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVCG678_RS07290 (AVCG678_07290) - 1521149..1521733 (-) 585 WP_234796168.1 GNAT family N-acetyltransferase -
  AVCG678_RS07295 (AVCG678_07295) - 1521696..1522499 (-) 804 WP_071205308.1 DUF72 domain-containing protein -
  AVCG678_RS07300 (AVCG678_07300) uvrA 1522521..1525442 (-) 2922 WP_071585201.1 excinuclease ABC subunit UvrA -
  AVCG678_RS07305 (AVCG678_07305) ssb 1525722..1526252 (+) 531 WP_015916118.1 single-stranded DNA-binding protein Machinery gene
  AVCG678_RS07310 (AVCG678_07310) - 1526295..1526549 (+) 255 WP_071205306.1 hypothetical protein -
  AVCG678_RS07315 (AVCG678_07315) - 1526625..1527254 (-) 630 WP_015916119.1 MarC family protein -
  AVCG678_RS07320 (AVCG678_07320) gyrA 1527533..1530325 (+) 2793 WP_071205305.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18495.25 Da        Isoelectric Point: 5.9441

>NTDB_id=458045 AVCG678_RS07305 WP_015916118.1 1525722..1526252(+) (ssb) [Agrobacterium vitis strain CG678]
MAGSVNKVILIGNLGADPEIRRTQDGKPIANLRIATSESWRDRNSGERKEKTEWHSVVIFNEGLCKVAEQYLKKGATVYI
EGQLQTRKWQDQNGNDRYSTEIVLQGFNSTLTMLGGRGDGAGGGAARGGSDFGGGGGGYDDYGSAPARSGGASSGGRGAS
APSGGFSRDMDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=458045 AVCG678_RS07305 WP_015916118.1 1525722..1526252(+) (ssb) [Agrobacterium vitis strain CG678]
ATGGCTGGAAGCGTCAACAAGGTTATATTGATCGGCAATCTGGGAGCTGACCCGGAAATTCGCCGTACCCAGGACGGTAA
GCCGATTGCCAACCTGCGCATCGCCACGTCCGAATCCTGGCGCGACCGTAATTCCGGCGAGCGCAAAGAAAAGACTGAAT
GGCATAGCGTGGTGATCTTCAACGAAGGTCTCTGCAAGGTGGCCGAACAATATCTGAAGAAGGGCGCAACTGTTTATATC
GAGGGCCAGCTTCAGACCCGTAAATGGCAGGACCAGAACGGCAATGACCGTTACTCGACGGAAATCGTCCTCCAGGGCTT
CAATTCGACCCTGACCATGCTTGGCGGTCGTGGCGATGGGGCAGGCGGCGGTGCTGCCCGTGGCGGCAGCGATTTCGGCG
GAGGGGGCGGTGGCTACGACGACTACGGCTCGGCCCCGGCCCGCAGCGGCGGTGCGTCGTCCGGCGGTCGCGGTGCCAGT
GCGCCGTCGGGCGGATTCTCGCGCGATATGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9JWR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.299

98.864

0.517
  ssb Glaesserella parasuis strain SC1401

46.774

100

0.494
  ssb Neisseria meningitidis MC58

40.331

100

0.415
  ssb Neisseria gonorrhoeae MS11

40.331

100

0.415