Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HWQ56_RS25735 Genome accession   NZ_CP056030
Coordinates   5749235..5749750 (-) Length   171 a.a.
NCBI ID   WP_158154265.1    Uniprot ID   A0A7D5DAZ1
Organism   Pseudomonas eucalypticola strain NP-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5744235..5754750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ56_RS25715 (HWQ56_25715) - 5745225..5745737 (+) 513 WP_158152621.1 DUF3299 domain-containing protein -
  HWQ56_RS25720 (HWQ56_25720) - 5745842..5746540 (+) 699 WP_158152622.1 OmpW family outer membrane protein -
  HWQ56_RS25725 (HWQ56_25725) - 5746595..5747524 (-) 930 WP_176572069.1 NAD-dependent epimerase/dehydratase family protein -
  HWQ56_RS25730 (HWQ56_25730) - 5747517..5748401 (-) 885 WP_158152624.1 sugar nucleotide-binding protein -
  HWQ56_RS25735 (HWQ56_25735) ssb 5749235..5749750 (-) 516 WP_158154265.1 single-stranded DNA-binding protein Machinery gene
  HWQ56_RS25740 (HWQ56_25740) - 5749760..5751154 (-) 1395 WP_158154264.1 MFS transporter -
  HWQ56_RS25745 (HWQ56_25745) uvrA 5751333..5754167 (+) 2835 WP_158154263.1 excinuclease ABC subunit UvrA -
  HWQ56_RS25750 (HWQ56_25750) bfr 5754258..5754722 (-) 465 WP_176572070.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19145.24 Da        Isoelectric Point: 5.9314

>NTDB_id=457971 HWQ56_RS25735 WP_158154265.1 5749235..5749750(-) (ssb) [Pseudomonas eucalypticola strain NP-1]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTNQRVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQQGDQNQGGNNYQQSAPRQQAPRPQQAAPQQSRPAPQQAAPQPAA
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=457971 HWQ56_RS25735 WP_158154265.1 5749235..5749750(-) (ssb) [Pseudomonas eucalypticola strain NP-1]
ATGGCCCGTGGGGTTAACAAAGTCATTTTGGTCGGTACTTGCGGTCAGGATCCTGAAGTGCGCTACCTGCCCAACGGCAA
CGCGGTCACCAACCTGAGCCTGGCGACCAGCGAGCAGTGGACCGACAAGCAGACCAACCAGCGCGTCGAGCGCACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGGTTTATATCGAA
GGCAAGCTGCAGACTCGCGAGTGGGAAAAGGACGGCATCAAACGCTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGCCCACAACAGGGCGACCAGAACCAGGGCGGCAACAACTACCAGCAGTCGGCCCCACGCC
AGCAAGCGCCACGCCCTCAGCAGGCCGCACCACAGCAGTCGCGCCCAGCCCCGCAACAGGCGGCGCCACAGCCAGCGGCA
GATTTCGATAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D5DAZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.983

100

0.596
  ssb Glaesserella parasuis strain SC1401

48.128

100

0.526
  ssb Neisseria meningitidis MC58

47.222

100

0.497
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.497