Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV014_RS15135 Genome accession   NZ_CP055599
Coordinates   3133195..3133731 (+) Length   178 a.a.
NCBI ID   WP_104919864.1    Uniprot ID   -
Organism   Escherichia fergusonii strain RHB41-C23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3128195..3138731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV014_RS15115 (HV014_15115) aphA 3128489..3129202 (+) 714 WP_104919862.1 acid phosphatase AphA -
  HV014_RS15120 (HV014_15120) - 3129312..3129728 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HV014_RS15125 (HV014_15125) - 3129732..3130088 (+) 357 WP_000155656.1 MmcQ/YjbR family DNA-binding protein -
  HV014_RS15130 (HV014_15130) uvrA 3130120..3132942 (-) 2823 WP_104919863.1 excinuclease ABC subunit UvrA -
  HV014_RS15135 (HV014_15135) ssb 3133195..3133731 (+) 537 WP_104919864.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV014_RS15140 (HV014_15140) - 3133830..3134111 (-) 282 WP_000201427.1 YjcB family protein -
  HV014_RS15145 (HV014_15145) soxS 3134355..3134678 (-) 324 WP_000019480.1 superoxide response transcriptional regulator SoxS -
  HV014_RS15150 (HV014_15150) soxR 3134765..3135229 (+) 465 WP_000412441.1 redox-sensitive transcriptional activator SoxR -
  HV014_RS15155 (HV014_15155) ghxP 3135808..3137157 (+) 1350 WP_000106868.1 guanine/hypoxanthine transporter GhxP -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18993.03 Da        Isoelectric Point: 5.2358

>NTDB_id=457824 HV014_RS15135 WP_104919864.1 3133195..3133731(+) (ssb) [Escherichia fergusonii strain RHB41-C23]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=457824 HV014_RS15135 WP_104919864.1 3133195..3133731(+) (ssb) [Escherichia fergusonii strain RHB41-C23]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCTAGCGAATATCTGCGCAAAGGTTCCCAGGTTTATATC
GAAGGTCAGTTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACGGAAGTGGTGGTGAATGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGTGCTCCGGCAGGCGGCAATATGGGCGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGTGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.758
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489