Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JJB22_RS01010 Genome accession   NZ_CP067307
Coordinates   213754..214290 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain ABW_A19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 208754..219290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB22_RS00990 (JJB22_00990) aphA 209043..209756 (+) 714 WP_001300837.1 acid phosphatase AphA -
  JJB22_RS00995 (JJB22_00995) yjbQ 209867..210283 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  JJB22_RS01000 (JJB22_01000) yjbR 210287..210643 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  JJB22_RS01005 (JJB22_01005) uvrA 210678..213500 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  JJB22_RS01010 (JJB22_01010) ssb 213754..214290 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  JJB22_RS01015 (JJB22_01015) yjcB 214389..214670 (-) 282 WP_001295689.1 YjcB family protein -
  JJB22_RS01020 (JJB22_01020) pdeC 215100..216686 (+) 1587 WP_000019536.1 c-di-GMP phosphodiesterase PdeC -
  JJB22_RS01025 (JJB22_01025) soxS 216689..217012 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  JJB22_RS01030 (JJB22_01030) soxR 217098..217562 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=457769 JJB22_RS01010 WP_000168305.1 213754..214290(+) (ssb) [Escherichia coli strain ABW_A19]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=457769 JJB22_RS01010 WP_000168305.1 213754..214290(+) (ssb) [Escherichia coli strain ABW_A19]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489