Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV119_RS22530 Genome accession   NZ_CP055551
Coordinates   4864253..4864777 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter freundii strain RHBSTW-00200     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4859253..4869777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV119_RS22510 (HV119_22505) soxR 4860896..4861354 (-) 459 WP_043018085.1 redox-sensitive transcriptional activator SoxR -
  HV119_RS22515 (HV119_22510) soxS 4861441..4861764 (+) 324 WP_016155362.1 superoxide response transcriptional regulator SoxS -
  HV119_RS22520 (HV119_22515) - 4861767..4863353 (-) 1587 WP_181230889.1 EAL domain-containing protein -
  HV119_RS22525 (HV119_22520) - 4863905..4864186 (+) 282 WP_016155360.1 YjcB family protein -
  HV119_RS22530 (HV119_22525) ssb 4864253..4864777 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV119_RS22535 (HV119_22530) uvrA 4865029..4867851 (+) 2823 WP_043018083.1 excinuclease ABC subunit UvrA -
  HV119_RS22540 (HV119_22535) - 4867937..4868293 (-) 357 WP_006688292.1 MmcQ/YjbR family DNA-binding protein -
  HV119_RS22545 (HV119_22540) aphA 4868414..4869127 (-) 714 WP_043018082.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=457757 HV119_RS22530 WP_003826621.1 4864253..4864777(-) (ssb) [Citrobacter freundii strain RHBSTW-00200]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=457757 HV119_RS22530 WP_003826621.1 4864253..4864777(-) (ssb) [Citrobacter freundii strain RHBSTW-00200]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTCGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTGAACGTTGG
CGGCACCATGCAAATGCTGGGCGGTCGTCAGGGTGGTGGTGCTCCGGCAGGTGGCGGCCAGCAGCAGGGTGGTTGGGGTC
AGCCTCAGCAGCCTCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGTCAGCTCCGGCGGCGCCT
TCTAACGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5