Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   XCR_RS16170 Genome accession   NC_017271
Coordinates   3804700..3805758 (-) Length   352 a.a.
NCBI ID   WP_014508817.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani 756C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3799700..3810758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XCR_RS16150 (XCR_3568) - 3800766..3802709 (-) 1944 WP_014508815.1 type IV pilus secretin PilQ family protein -
  XCR_RS16155 (XCR_3569) - 3802729..3803262 (-) 534 WP_011038332.1 pilus assembly protein PilP -
  XCR_RS16160 (XCR_3570) - 3803259..3803924 (-) 666 WP_011038333.1 type 4a pilus biogenesis protein PilO -
  XCR_RS16165 (XCR_3571) - 3803921..3804700 (-) 780 WP_014508816.1 PilN domain-containing protein -
  XCR_RS16170 (XCR_3572) comM 3804700..3805758 (-) 1059 WP_014508817.1 pilus assembly protein PilM Machinery gene
  XCR_RS16175 (XCR_3573) - 3805974..3808400 (+) 2427 WP_014508818.1 penicillin-binding protein 1A -
  XCR_RS16180 (XCR_3574) - 3808978..3809628 (+) 651 WP_042597625.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37638.27 Da        Isoelectric Point: 4.3924

>NTDB_id=45765 XCR_RS16170 WP_014508817.1 3804700..3805758(-) (comM) [Xanthomonas campestris pv. raphani 756C]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGMTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=45765 XCR_RS16170 WP_014508817.1 3804700..3805758(-) (comM) [Xanthomonas campestris pv. raphani 756C]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTTATTGGTGTCGACATCAGTTCCACTGCGGTCAAGCTATTGCAGCTGTC
ACGCAGCGGAAATCGTTTTCGCGTGGAACATTACGCTGTGGAACCGTTGCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TCGAAGTCGAAGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCGGCC
GTGGCTGGCTCGGCGGTGATCACCAAGCTGATCCCCATGCCGGCGGATCTGGACGATAGCGATCTGGAAGCCCAGGTCGA
GCTGGAAGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGTTGGCGGCGTCGCGTTCGGAGAACGTCGAGCTGCGCCAATCGGCGTTGGAGCTCGGT
GGGCTGGTCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTTGCCCTGGTTGCCAGCGAATTGCCGGT
CGCCGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCGACCATGACCACGTTGAGCGTGCTGCGCTCAGGGCGCAGCC
TCTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTCACCGACGAAGTCATGCGCCGCTACGGCATGACCTATGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTATGCGGGCAGCGAATTCAATCGCGTCGATTGCATCGTGCTGGCAGGCG
GCTGCGCCGCGTTGTCGCGCCTGCCGGAGATGGTGGAAGAACAGCTGGGCGTGACTACCGTGGTCGCCAACCCGCTGGCA
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474

Multiple sequence alignment