Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV187_RS26695 Genome accession   NZ_CP055325
Coordinates   5584545..5585072 (-) Length   175 a.a.
NCBI ID   WP_004097799.1    Uniprot ID   A0A0J2K732
Organism   Klebsiella michiganensis strain RHBSTW-00409     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 5582836..5609800 5584545..5585072 within 0


Gene organization within MGE regions


Location: 5582836..5609800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV187_RS26690 (HV187_26705) - 5582836..5584458 (+) 1623 WP_177340684.1 lytic transglycosylase F -
  HV187_RS26695 (HV187_26710) ssb 5584545..5585072 (-) 528 WP_004097799.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HV187_RS26700 (HV187_26715) uvrA 5585319..5588144 (+) 2826 WP_177340685.1 excinuclease ABC subunit UvrA -
  HV187_RS26705 (HV187_26720) - 5588277..5588687 (+) 411 WP_004097795.1 hypothetical protein -
  HV187_RS26710 (HV187_26725) - 5588690..5589007 (+) 318 WP_004097794.1 hypothetical protein -
  HV187_RS26715 (HV187_26730) - 5589010..5589363 (-) 354 WP_004097793.1 MmcQ/YjbR family DNA-binding protein -
  HV187_RS26720 (HV187_26735) - 5589366..5589782 (-) 417 WP_004097792.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HV187_RS26725 (HV187_26740) - 5589774..5589911 (+) 138 WP_157214916.1 hypothetical protein -
  HV187_RS26730 (HV187_26745) aphA 5589925..5590638 (-) 714 WP_004097791.1 acid phosphatase AphA -
  HV187_RS26735 (HV187_26750) tyrB 5590833..5592026 (-) 1194 WP_014837136.1 aromatic amino acid transaminase -
  HV187_RS26740 (HV187_26755) alr 5592263..5593342 (-) 1080 WP_004097789.1 alanine racemase -
  HV187_RS26745 (HV187_26760) dnaB 5593488..5594903 (-) 1416 WP_004097788.1 replicative DNA helicase -
  HV187_RS26750 (HV187_26765) - 5594965..5595948 (+) 984 WP_009654680.1 quinone oxidoreductase -
  HV187_RS26755 (HV187_26770) pspG 5596252..5596494 (-) 243 WP_004097786.1 envelope stress response protein PspG -
  HV187_RS26760 (HV187_26775) dusA 5596635..5597633 (-) 999 WP_009654676.1 tRNA dihydrouridine(20/20a) synthase DusA -
  HV187_RS26765 (HV187_26780) - 5597738..5598226 (-) 489 WP_004097782.1 cupin domain-containing protein -
  HV187_RS26770 (HV187_26785) zur 5598428..5598943 (+) 516 WP_004097781.1 zinc uptake transcriptional repressor Zur -
  HV187_RS26775 (HV187_26790) - 5599154..5599363 (-) 210 WP_004137568.1 CsbD family protein -
  HV187_RS26780 (HV187_26795) dinF 5599500..5600816 (-) 1317 WP_109213598.1 MATE family efflux transporter DinF -
  HV187_RS26785 (HV187_26800) lexA 5600889..5601497 (-) 609 WP_004097774.1 transcriptional repressor LexA -
  HV187_RS26790 (HV187_26805) - 5601620..5601988 (-) 369 WP_128350075.1 diacylglycerol kinase -
  HV187_RS26795 (HV187_26810) plsB 5602118..5604541 (+) 2424 WP_004097770.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  HV187_RS26800 (HV187_26815) ubiA 5604640..5605509 (-) 870 WP_004097768.1 4-hydroxybenzoate octaprenyltransferase -
  HV187_RS26805 (HV187_26820) ubiC 5605522..5606019 (-) 498 WP_004097767.1 chorismate lyase -
  HV187_RS26810 (HV187_26825) malM 5606208..5607125 (-) 918 WP_177339565.1 maltose operon protein MalM -
  HV187_RS26815 (HV187_26830) - 5607233..5608519 (-) 1287 WP_004097765.1 maltoporin -
  HV187_RS26820 (HV187_26835) malK 5608691..5609800 (-) 1110 WP_004097762.1 maltose/maltodextrin ABC transporter ATP-binding protein MalK -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18776.81 Da        Isoelectric Point: 5.2456

>NTDB_id=457596 HV187_RS26695 WP_004097799.1 5584545..5585072(-) (ssb) [Klebsiella michiganensis strain RHBSTW-00409]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQQGAGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=457596 HV187_RS26695 WP_004097799.1 5584545..5585072(-) (ssb) [Klebsiella michiganensis strain RHBSTW-00409]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCGGCGAGTATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGACTGACCAATCCGGTCAGGAAAAATACACCACCGAGGTTGTCGTTAACGTTGG
CGGCACGATGCAAATGCTCGGCGGTCGTCAGCAGGGCGCGGGCGCCCCGGCAGGCGGTGGTCAGCAGCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCGCAGGGCGGAAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGGCGCCGGCAGCC
CCTTCCAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J2K732

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.771
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.611
  ssb Neisseria meningitidis MC58

48.045

100

0.491
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.491