Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HV559_RS06185 Genome accession   NZ_CP055306
Coordinates   1275622..1277001 (-) Length   459 a.a.
NCBI ID   WP_176808292.1    Uniprot ID   -
Organism   Mannheimia pernigra strain BNO311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1270622..1282001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV559_RS06155 (HV559_06155) - 1270849..1272087 (-) 1239 WP_176809843.1 multifunctional CCA addition/repair protein -
  HV559_RS06160 (HV559_06160) nth 1272120..1272755 (-) 636 WP_176808290.1 endonuclease III -
  HV559_RS06165 (HV559_06165) - 1272758..1273522 (-) 765 WP_176808291.1 TSUP family transporter -
  HV559_RS06170 (HV559_06170) proB 1273522..1274613 (-) 1092 WP_176809844.1 glutamate 5-kinase -
  HV559_RS06175 (HV559_06175) - 1274728..1275222 (+) 495 WP_159629590.1 dihydrofolate reductase -
  HV559_RS06180 (HV559_06180) - 1275350..1275583 (+) 234 WP_159629593.1 YgjV family protein -
  HV559_RS06185 (HV559_06185) radA 1275622..1277001 (-) 1380 WP_176808292.1 DNA repair protein RadA Machinery gene
  HV559_RS06190 (HV559_06190) pilA 1277182..1277625 (+) 444 WP_176809845.1 prepilin peptidase-dependent pilin Machinery gene
  HV559_RS06195 (HV559_06195) pilB 1277647..1279047 (+) 1401 WP_176809846.1 GspE/PulE family protein Machinery gene
  HV559_RS06200 (HV559_06200) pilC 1279031..1280224 (+) 1194 WP_176809847.1 type II secretion system F family protein Machinery gene
  HV559_RS06205 (HV559_06205) - 1280227..1280883 (+) 657 WP_176808296.1 prepilin peptidase -
  HV559_RS06210 (HV559_06210) coaE 1280915..1281553 (+) 639 WP_176809848.1 dephospho-CoA kinase -
  HV559_RS06215 (HV559_06215) yacG 1281535..1281720 (+) 186 WP_159629615.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49817.36 Da        Isoelectric Point: 7.9649

>NTDB_id=457528 HV559_RS06185 WP_176808292.1 1275622..1277001(-) (radA) [Mannheimia pernigra strain BNO311]
MAKAPKTAYVCNDCGAEYSRWMGQCRECKAWNTISEVRLISSKESAKSDRFSGYAGETSGKVQALSDISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLAQNIPTLYVTGEESLQQVAMRANRLGLPAQNLKMLSETSVEH
ICNIADQEKPKIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSHKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTPGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALMSSFRNRPLPQDLVIFGEVG
LAGEIRPVTSGQERISEAAKHGFRRAIIPHGNAPKKPIKDMDVFTVKKLSDALDILYNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=457528 HV559_RS06185 WP_176808292.1 1275622..1277001(-) (radA) [Mannheimia pernigra strain BNO311]
ATGGCAAAAGCACCTAAAACCGCCTATGTTTGTAATGATTGTGGGGCGGAATACTCCCGTTGGATGGGGCAATGCCGAGA
ATGTAAGGCTTGGAATACCATCAGCGAAGTTAGGTTGATTTCGAGTAAAGAGTCAGCAAAATCTGACCGCTTTAGTGGTT
ACGCAGGTGAAACATCAGGCAAAGTGCAAGCACTTTCAGATATTAGCCTGCAAGAAGTGCCTCGCTTTAGCAGTGGTTTT
AATGAGCTAGATCGTGTGCTAGGTGGGGGGGTTGTACCAGGTTCTGCCATTCTTATTGGCGGACACCCTGGTGCAGGCAA
AAGTACGCTTTTACTCCAAGTAATGTGTGGCTTAGCTCAAAATATCCCTACTCTTTATGTTACAGGTGAGGAATCTTTGC
AGCAAGTGGCAATGCGAGCTAACCGTTTAGGTTTACCTGCACAAAATCTTAAAATGCTATCTGAAACCTCCGTTGAGCAT
ATTTGCAATATTGCCGATCAAGAAAAACCTAAAATTATGGTAATCGATTCTATTCAAGTGATGCACTTATCCGATATTCA
ATCCTCTCCAGGAAGCGTTTCACAGGTTCGAGAATGTGCTTCATTTTTAACTCGTTATGCTAAAACCCGCCAAGTCGCCA
TTATTATGGTAGGGCATGTCACTAAAGATGGGACACTTGCTGGCCCAAAAGTATTGGAACACGCTATTGATGCTTCATTA
TTACTTGAAGGGGAGTCCGATTCTCGATTCCGCACTTTGCGTAGCCATAAAAATCGTTTTGGTGCAGTAAATGAGTTAGG
TGTATTCGCAATGACTGAGCAGGGCTTGAAAGAAGTTAAAAATCCCTCTGCAATTTTCCTTAGCCGTAGCGAAGAACAAA
CGCCTGGTAGCTCTGTAATGGTGTTGTGGGAAGGAACTCGCCCACTTCTAGTTGAAATTCAGGCTCTAGTCGATCATTCA
ATGCTAGCAAATCCTCGCCGTGTCGCCGTTGGTTTAGATCATAACCGTTTATCGCTACTGCTTGCAGTTTTACATCGACA
CGGCGGACTACAAATGTCAGATCAAGACGTGTTTGTCAACGTCGTAGGCGGTGTGAAAGTAACCGAAACCAGTGCCGATC
TGGCTCTGATCTTGGCTTTAATGTCTAGCTTTCGCAATCGCCCATTACCACAAGATTTAGTTATTTTTGGCGAGGTGGGA
TTAGCAGGGGAAATCCGTCCTGTGACTAGCGGACAAGAACGAATTAGTGAAGCAGCAAAACACGGTTTTAGGCGAGCCAT
CATTCCCCACGGTAATGCGCCTAAAAAGCCGATTAAAGATATGGACGTTTTTACTGTAAAAAAACTAAGTGATGCGTTAG
ATATTCTTTATAATTTATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(84-224)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

99.564

0.481
  radA Streptococcus mitis NCTC 12261

43.833

98.911

0.434
  radA Streptococcus mitis SK321

43.612

98.911

0.431
  radA Streptococcus pneumoniae Rx1

42.919

100

0.429
  radA Streptococcus pneumoniae D39

42.919

100

0.429
  radA Streptococcus pneumoniae R6

42.919

100

0.429
  radA Streptococcus pneumoniae TIGR4

42.919

100

0.429