Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUK62_RS16925 Genome accession   NZ_CP055277
Coordinates   3460253..3460837 (-) Length   194 a.a.
NCBI ID   WP_004691666.1    Uniprot ID   A0A7H8SPE4
Organism   Acinetobacter sp. NEB 394     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3450047..3460106 3460253..3460837 flank 147


Gene organization within MGE regions


Location: 3450047..3460837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK62_RS16860 (HUK62_16860) - 3451069..3451959 (-) 891 WP_176538400.1 LysR substrate-binding domain-containing protein -
  HUK62_RS16865 (HUK62_16865) - 3452094..3453512 (+) 1419 WP_176538401.1 aspartate ammonia-lyase -
  HUK62_RS16870 (HUK62_16870) - 3453784..3454413 (+) 630 WP_228723770.1 IS1595-like element ISAcra1 family transposase -
  HUK62_RS16875 (HUK62_16875) ssb 3454445..3455059 (-) 615 WP_176538402.1 single-stranded DNA-binding protein -
  HUK62_RS16880 (HUK62_16880) - 3455120..3455512 (-) 393 Protein_3286 transposase family protein -
  HUK62_RS16885 (HUK62_16885) - 3455550..3455954 (-) 405 WP_176538403.1 transposase family protein -
  HUK62_RS16895 (HUK62_16895) - 3457642..3457851 (+) 210 WP_228723771.1 helix-turn-helix transcriptional regulator -
  HUK62_RS16905 (HUK62_16905) - 3458047..3458190 (-) 144 Protein_3290 IS30 family transposase -
  HUK62_RS16910 (HUK62_16910) - 3458154..3458339 (+) 186 WP_141192738.1 hypothetical protein -
  HUK62_RS16915 (HUK62_16915) - 3458510..3459010 (-) 501 WP_110976010.1 YqhA family protein -
  HUK62_RS16920 (HUK62_16920) - 3459342..3460106 (-) 765 WP_176538404.1 IS5 family transposase -
  HUK62_RS16925 (HUK62_16925) ssb 3460253..3460837 (-) 585 WP_004691666.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21300.03 Da        Isoelectric Point: 6.4819

>NTDB_id=457395 HUK62_RS16925 WP_004691666.1 3460253..3460837(-) (ssb) [Acinetobacter sp. NEB 394]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDNNRQQGEQMQGGNDGYAQPRFNNNQGGGYNNNNNQGGYGGNPAAGNSNNQQ
SGYANNNPSGFAPKAAPQSAPAAAPADMDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=457395 HUK62_RS16925 WP_004691666.1 3460253..3460837(-) (ssb) [Acinetobacter sp. NEB 394]
ATGCGCGGTGTAAATAAAGTTATTTTAGTGGGCACATTAGGCCGAGATCCAGAGACGAAAACTTTTCCAAACGGTGGTTC
GTTGACCCAGTTTTCAATTGCCACGAGCGACTCTTGGACAGACAAAAGCACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGTTACACAACCGTCTAGGTGAAATTGCGCAACAGTACCTACGTAAAGGTTCGAAAGTTTATATTGAAGGT
TCACTGCGTACTCGTCAGTGGACAGATCAAAATGGTCAAGAACGCTACACCACAGAAATTCGTGGTGAGCAAATGCAGAT
GCTCGACAACAACCGTCAGCAAGGTGAGCAAATGCAAGGCGGAAATGATGGTTATGCACAACCACGTTTCAATAATAACC
AAGGTGGTGGTTATAACAATAACAACAACCAAGGCGGTTACGGCGGCAACCCTGCAGCGGGCAATAGCAACAACCAACAA
AGTGGTTATGCGAACAATAACCCAAGCGGTTTTGCACCAAAGGCGGCACCTCAGTCAGCGCCTGCGGCAGCACCAGCAGA
TATGGATGATGATCTTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SPE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.724

100

0.459
  ssb Neisseria meningitidis MC58

41.414

100

0.423
  ssb Neisseria gonorrhoeae MS11

41.414

100

0.423