Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AVF2S5_RS07240 Genome accession   NZ_CP055268
Coordinates   1521779..1522309 (+) Length   176 a.a.
NCBI ID   WP_015916118.1    Uniprot ID   B9JWR9
Organism   Agrobacterium vitis strain F2/5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1516779..1527309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVF2S5_RS07225 (AVF2S5_07205) - 1517207..1517791 (-) 585 WP_234903324.1 GNAT family N-acetyltransferase -
  AVF2S5_RS07230 (AVF2S5_07210) - 1517754..1518557 (-) 804 WP_174110820.1 DUF72 domain-containing protein -
  AVF2S5_RS07235 (AVF2S5_07215) uvrA 1518579..1521500 (-) 2922 WP_174110821.1 excinuclease ABC subunit UvrA -
  AVF2S5_RS07240 (AVF2S5_07220) ssb 1521779..1522309 (+) 531 WP_015916118.1 single-stranded DNA-binding protein Machinery gene
  AVF2S5_RS07245 (AVF2S5_07225) tnpA 1522489..1522923 (+) 435 WP_174110822.1 IS200/IS605 family transposase -
  AVF2S5_RS07250 (AVF2S5_07230) - 1523011..1523640 (-) 630 WP_174110823.1 MarC family protein -
  AVF2S5_RS07255 (AVF2S5_07235) gyrA 1523919..1526711 (+) 2793 WP_174110824.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18495.25 Da        Isoelectric Point: 5.9441

>NTDB_id=457333 AVF2S5_RS07240 WP_015916118.1 1521779..1522309(+) (ssb) [Agrobacterium vitis strain F2/5]
MAGSVNKVILIGNLGADPEIRRTQDGKPIANLRIATSESWRDRNSGERKEKTEWHSVVIFNEGLCKVAEQYLKKGATVYI
EGQLQTRKWQDQNGNDRYSTEIVLQGFNSTLTMLGGRGDGAGGGAARGGSDFGGGGGGYDDYGSAPARSGGASSGGRGAS
APSGGFSRDMDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=457333 AVF2S5_RS07240 WP_015916118.1 1521779..1522309(+) (ssb) [Agrobacterium vitis strain F2/5]
ATGGCTGGAAGCGTCAACAAGGTTATTTTGATCGGCAATCTGGGAGCTGACCCGGAAATCCGCCGCACCCAGGACGGTAA
GCCGATTGCCAACCTGCGCATCGCCACGTCCGAATCCTGGCGCGACCGTAATTCCGGCGAGCGCAAGGAAAAAACGGAAT
GGCACAGCGTGGTGATCTTCAATGAAGGTCTCTGCAAGGTGGCCGAACAATATCTGAAGAAGGGCGCGACTGTTTATATC
GAGGGCCAGCTTCAGACCCGTAAATGGCAGGACCAGAATGGCAATGACCGTTACTCGACGGAAATCGTCCTCCAGGGCTT
CAATTCGACCCTGACCATGCTTGGCGGCCGTGGCGATGGAGCAGGCGGCGGCGCTGCCCGTGGCGGCAGCGACTTCGGTG
GTGGCGGTGGTGGCTACGACGATTATGGCTCAGCCCCGGCCCGCAGCGGCGGCGCTTCGTCCGGCGGCCGTGGCGCCAGT
GCGCCATCGGGCGGATTCTCGCGCGATATGGACGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9JWR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.299

98.864

0.517
  ssb Glaesserella parasuis strain SC1401

46.774

100

0.494
  ssb Neisseria meningitidis MC58

40.331

100

0.415
  ssb Neisseria gonorrhoeae MS11

40.331

100

0.415