Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AVCG412_RS07250 Genome accession   NZ_CP055265
Coordinates   1539555..1540085 (-) Length   176 a.a.
NCBI ID   WP_060717816.1    Uniprot ID   -
Organism   Agrobacterium vitis strain CG412     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1534555..1545085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVCG412_RS07235 (AVCG412_07215) gyrA 1535483..1538275 (-) 2793 WP_060717814.1 DNA gyrase subunit A -
  AVCG412_RS07240 (AVCG412_07220) - 1538554..1539183 (+) 630 WP_015916119.1 MarC family protein -
  AVCG412_RS07245 (AVCG412_07225) - 1539258..1539512 (-) 255 WP_060717815.1 hypothetical protein -
  AVCG412_RS07250 (AVCG412_07230) ssb 1539555..1540085 (-) 531 WP_060717816.1 single-stranded DNA-binding protein Machinery gene
  AVCG412_RS07255 (AVCG412_07235) uvrA 1540367..1543288 (+) 2922 WP_060717817.1 excinuclease ABC subunit UvrA -
  AVCG412_RS07260 (AVCG412_07240) - 1543310..1544113 (+) 804 WP_060717818.1 DUF72 domain-containing protein -
  AVCG412_RS07265 (AVCG412_07245) - 1544121..1544660 (+) 540 WP_081089006.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18495.25 Da        Isoelectric Point: 5.9492

>NTDB_id=457326 AVCG412_RS07250 WP_060717816.1 1539555..1540085(-) (ssb) [Agrobacterium vitis strain CG412]
MAGSVNKVILIGNLGADPEIRRTQDGKPIANLRIATSESWRDRNSGERKEKTEWHSVVIFNEGLCKVAEQYLKKGATVYI
EGQLQTRKWQDQNGNDRYSTEIVLQGFNSTLTMLGGRGEGGGAARGGSDFGGGGGGGYDDYGSAPARSGGASSGGGRGAS
APSGGFSRDMDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=457326 AVCG412_RS07250 WP_060717816.1 1539555..1540085(-) (ssb) [Agrobacterium vitis strain CG412]
ATGGCTGGAAGCGTCAACAAGGTTATATTGATCGGCAATCTGGGCGCGGACCCGGAAATTCGTCGTACCCAGGACGGTAA
GCCAATTGCCAACCTGCGCATTGCCACGTCTGAATCCTGGCGCGACCGTAATTCCGGTGAGCGCAAGGAGAAGACCGAAT
GGCACAGCGTGGTGATCTTCAATGAAGGTCTCTGCAAGGTAGCCGAACAATATCTGAAGAAGGGCGCGACCGTTTATATC
GAGGGCCAGCTTCAGACCCGCAAATGGCAGGACCAAAACGGCAATGACCGTTACTCGACGGAAATCGTCCTGCAGGGCTT
CAATTCGACCCTGACCATGCTTGGTGGCCGTGGCGAAGGTGGCGGAGCGGCCCGTGGCGGCAGCGATTTCGGCGGCGGCG
GCGGTGGTGGCTACGACGACTATGGCTCAGCCCCAGCCCGCAGCGGCGGCGCATCCTCGGGTGGTGGTCGCGGCGCCAGT
GCGCCATCCGGCGGTTTCTCCCGCGATATGGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.918

100

0.511
  ssb Vibrio cholerae strain A1552

51.445

98.295

0.506
  ssb Neisseria gonorrhoeae MS11

40.217

100

0.42
  ssb Neisseria meningitidis MC58

39.891

100

0.415