Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HUW50_RS09100 Genome accession   NZ_CP055263
Coordinates   1939038..1939562 (-) Length   174 a.a.
NCBI ID   WP_066338724.1    Uniprot ID   -
Organism   Metabacillus sp. KUDC1714     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1934038..1944562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW50_RS09080 (HUW50_09080) rplI 1935147..1935593 (-) 447 WP_066338717.1 50S ribosomal protein L9 -
  HUW50_RS09085 (HUW50_09085) - 1935590..1937563 (-) 1974 WP_066338721.1 DHH family phosphoesterase -
  HUW50_RS09090 (HUW50_09090) - 1937603..1938538 (-) 936 WP_083964768.1 YybS family protein -
  HUW50_RS09095 (HUW50_09095) rpsR 1938752..1938991 (-) 240 WP_046588211.1 30S ribosomal protein S18 -
  HUW50_RS09100 (HUW50_09100) ssbA 1939038..1939562 (-) 525 WP_066338724.1 single-stranded DNA-binding protein Machinery gene
  HUW50_RS09105 (HUW50_09105) rpsF 1939601..1939891 (-) 291 WP_066338859.1 30S ribosomal protein S6 -
  HUW50_RS09110 (HUW50_09110) ychF 1940204..1941304 (-) 1101 WP_066338729.1 redox-regulated ATPase YchF -
  HUW50_RS09115 (HUW50_09115) - 1941622..1943634 (-) 2013 WP_066338733.1 molybdopterin-dependent oxidoreductase -
  HUW50_RS09120 (HUW50_09120) - 1943652..1943858 (-) 207 WP_066338737.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19192.79 Da        Isoelectric Point: 4.6437

>NTDB_id=457301 HUW50_RS09100 WP_066338724.1 1939038..1939562(-) (ssbA) [Metabacillus sp. KUDC1714]
MLNRVVLVGRLTKDPDLRYTPSGVAVATFTLAVNRTFTNQQGEREADFLNCVIWRKQAENVANFLKKGSLAGVDGRLQSR
SYEDQSGKRVYVTEVVAESVQFLEPRGASGGGNNNYNSNNNNNNNFGGYSENSGNQNPFGSDQNQRNQGRTSFDDDPFAN
DGKPIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=457301 HUW50_RS09100 WP_066338724.1 1939038..1939562(-) (ssbA) [Metabacillus sp. KUDC1714]
ATGTTGAATCGAGTTGTACTAGTCGGAAGACTAACAAAAGATCCAGATTTGCGTTACACACCAAGCGGAGTAGCTGTTGC
TACATTTACTTTAGCAGTAAACCGTACGTTTACAAACCAACAAGGTGAAAGAGAAGCTGACTTTCTAAACTGTGTGATTT
GGCGAAAGCAAGCCGAAAATGTTGCAAACTTTCTTAAAAAAGGAAGCTTAGCAGGTGTTGACGGTCGTTTGCAATCACGT
AGCTATGAGGATCAAAGCGGGAAACGTGTATATGTAACAGAGGTTGTTGCAGAAAGTGTCCAATTCCTTGAGCCTAGAGG
TGCGAGCGGCGGAGGCAACAATAACTACAACAGCAACAATAACAATAATAATAACTTTGGTGGGTATTCAGAAAACTCTG
GTAATCAAAACCCATTCGGTTCAGATCAAAATCAACGTAATCAAGGTCGTACAAGCTTTGATGACGATCCATTTGCAAAC
GATGGAAAGCCTATTGATATATCTGATGATGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

73.864

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

56.983

100

0.586
  ssb Glaesserella parasuis strain SC1401

37.017

100

0.385
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.92

0.385