Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUU83_RS00925 Genome accession   NZ_CP055251
Coordinates   204241..204777 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain AH01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 199241..209777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUU83_RS00905 (HUU83_00905) aphA 199530..200243 (+) 714 WP_001317548.1 acid phosphatase AphA -
  HUU83_RS00910 (HUU83_00910) yjbQ 200354..200770 (+) 417 WP_000270383.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HUU83_RS00915 (HUU83_00915) yjbR 200774..201130 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HUU83_RS00920 (HUU83_00920) uvrA 201165..203987 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HUU83_RS00925 (HUU83_00925) ssb 204241..204777 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HUU83_RS00930 (HUU83_00930) yjcB 204876..205157 (-) 282 WP_001295689.1 YjcB family protein -
  HUU83_RS00935 (HUU83_00935) pdeC 205587..207173 (+) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  HUU83_RS00940 (HUU83_00940) soxS 207176..207499 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HUU83_RS00945 (HUU83_00945) soxR 207585..208049 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=457209 HUU83_RS00925 WP_000168305.1 204241..204777(+) (ssb) [Escherichia coli strain AH01]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=457209 HUU83_RS00925 WP_000168305.1 204241..204777(+) (ssb) [Escherichia coli strain AH01]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489