Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUW42_RS22065 Genome accession   NZ_CP055233
Coordinates   4628034..4628528 (+) Length   164 a.a.
NCBI ID   WP_011087466.1    Uniprot ID   A0A1I3CP05
Organism   Bradyrhizobium diazoefficiens strain 113-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4623034..4633528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW42_RS22050 (HUW42_22060) - 4624905..4625657 (-) 753 WP_011087469.1 outer membrane beta-barrel protein -
  HUW42_RS22055 (HUW42_22065) - 4625881..4626570 (-) 690 WP_011087468.1 outer membrane protein -
  HUW42_RS22060 (HUW42_22070) - 4626806..4627585 (-) 780 WP_011087467.1 outer membrane beta-barrel protein -
  HUW42_RS22065 (HUW42_22075) ssb 4628034..4628528 (+) 495 WP_011087466.1 single-stranded DNA-binding protein Machinery gene
  HUW42_RS22070 (HUW42_22080) - 4628729..4629127 (+) 399 WP_038967458.1 DUF2306 domain-containing protein -
  HUW42_RS22075 (HUW42_22085) gyrA 4629295..4632024 (+) 2730 WP_011087464.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17522.49 Da        Isoelectric Point: 6.9882

>NTDB_id=457125 HUW42_RS22065 WP_011087466.1 4628034..4628528(+) (ssb) [Bradyrhizobium diazoefficiens strain 113-2]
MAGSVNKVILVGNLGKDPEIRRTQDGRPIANLSIATSETWRDKNSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYI
EGALQTRKWTDQSGVEKYSTEVVLQGFNSTLTMLDGRGGGGGGSFGEEPGGDFGSSGPVSSAPRRAVAAGGGGRNSDMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=457125 HUW42_RS22065 WP_011087466.1 4628034..4628528(+) (ssb) [Bradyrhizobium diazoefficiens strain 113-2]
ATGGCGGGAAGCGTCAACAAGGTCATTCTGGTTGGAAATCTCGGCAAGGATCCTGAAATCCGCCGTACCCAGGACGGGCG
GCCGATCGCGAATTTGAGCATCGCGACCTCGGAGACCTGGCGCGACAAGAACAGCGGCGAGCGCAAGGAAAAGACCGAGT
GGCATCGCGTCGTGATCTTCAATGAAGGCCTCTGCAAGGTCGCCGAGCAGTACCTGAAGAAGGGCGCCAAGGTTTATATC
GAGGGCGCGCTCCAGACCCGCAAATGGACCGACCAGAGCGGCGTTGAGAAGTACTCCACCGAAGTCGTGCTCCAGGGGTT
CAACTCGACGCTGACGATGCTCGACGGCCGCGGCGGCGGGGGAGGCGGCAGCTTCGGCGAGGAGCCGGGCGGCGATTTCG
GCTCCTCCGGTCCCGTCAGCAGCGCGCCGCGCCGCGCCGTCGCCGCCGGTGGCGGTGGCCGCAACAGCGACATGGACGAC
GACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I3CP05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.724

100

0.549
  ssb Glaesserella parasuis strain SC1401

44.086

100

0.5
  ssb Neisseria meningitidis MC58

40.223

100

0.439
  ssb Neisseria gonorrhoeae MS11

39.106

100

0.427