Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUZ43_RS25350 Genome accession   NZ_CP055216
Coordinates   5327656..5328183 (-) Length   175 a.a.
NCBI ID   WP_004856483.1    Uniprot ID   A0AAP1MZU7
Organism   Raoultella ornithinolytica strain STEFF_15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5322656..5333183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ43_RS25340 (HUZ43_25240) - 5323069..5325330 (-) 2262 WP_015585362.1 TonB-dependent siderophore receptor -
  HUZ43_RS25345 (HUZ43_25245) - 5326008..5327558 (+) 1551 WP_065905669.1 lytic transglycosylase F -
  HUZ43_RS25350 (HUZ43_25250) ssb 5327656..5328183 (-) 528 WP_004856483.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HUZ43_RS25355 (HUZ43_25255) uvrA 5328430..5331255 (+) 2826 WP_004856481.1 excinuclease ABC subunit UvrA -
  HUZ43_RS25360 (HUZ43_25260) - 5331256..5331612 (-) 357 WP_004856479.1 MmcQ/YjbR family DNA-binding protein -
  HUZ43_RS25365 (HUZ43_25265) - 5331616..5332032 (-) 417 WP_004856477.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HUZ43_RS25370 (HUZ43_25270) aphA 5332178..5332891 (-) 714 WP_004856476.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18790.84 Da        Isoelectric Point: 5.2456

>NTDB_id=456861 HUZ43_RS25350 WP_004856483.1 5327656..5328183(-) (ssb) [Raoultella ornithinolytica strain STEFF_15]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEIVVNVGGTMQMLGGRQQGAGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=456861 HUZ43_RS25350 WP_004856483.1 5327656..5328183(-) (ssb) [Raoultella ornithinolytica strain STEFF_15]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCGGCGAGTATCTGCGTAAAGGTTCTCAGGTCTATATT
GAAGGCCAGCTGCGTACCCGTAAATGGACTGACCAATCTGGTCAGGAAAAATATACCACCGAGATCGTGGTTAACGTTGG
CGGCACGATGCAAATGCTCGGCGGTCGTCAGCAGGGCGCAGGCGCTCCGGCAGGCGGCGGTCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTTAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGGCACCGGCAGCA
CCTTCTAACGAACCCCCGATGGATTTCGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.766
  ssb Glaesserella parasuis strain SC1401

58.378

100

0.617
  ssb Neisseria meningitidis MC58

48.603

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.497