Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUZ48_RS23200 Genome accession   NZ_CP055213
Coordinates   4829277..4829801 (-) Length   174 a.a.
NCBI ID   WP_004151744.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain STEFF_21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4824277..4834801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ48_RS23190 (HUZ48_23130) - 4824721..4826979 (-) 2259 WP_023291640.1 TonB-dependent siderophore receptor -
  HUZ48_RS23195 (HUZ48_23135) - 4827568..4829148 (+) 1581 WP_060591266.1 lytic transglycosylase F -
  HUZ48_RS23200 (HUZ48_23140) ssb 4829277..4829801 (-) 525 WP_004151744.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HUZ48_RS23205 (HUZ48_23145) uvrA 4830056..4832881 (+) 2826 WP_023291635.1 excinuclease ABC subunit UvrA -
  HUZ48_RS23210 (HUZ48_23150) - 4832882..4833238 (-) 357 WP_023291634.1 MmcQ/YjbR family DNA-binding protein -
  HUZ48_RS23215 (HUZ48_23155) - 4833242..4833658 (-) 417 WP_048296434.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HUZ48_RS23220 (HUZ48_23160) aphA 4833790..4834503 (-) 714 WP_004151745.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18711.70 Da        Isoelectric Point: 5.2358

>NTDB_id=456840 HUZ48_RS23200 WP_004151744.1 4829277..4829801(-) (ssb) [Klebsiella quasipneumoniae strain STEFF_21]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=456840 HUZ48_RS23200 WP_004151744.1 4829277..4829801(-) (ssb) [Klebsiella quasipneumoniae strain STEFF_21]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCAGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGTGAGTACCTGCGTAAAGGCTCTCAGGTGTACATT
GAAGGCCAGCTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACTGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAACCAATTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGGCTCCGGCAGCACCT
TCCAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.776
  ssb Glaesserella parasuis strain SC1401

59.239

100

0.626
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5