Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUZ38_RS16150 Genome accession   NZ_CP055210
Coordinates   3322207..3322731 (+) Length   174 a.a.
NCBI ID   WP_004151744.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain STEFF_2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3317207..3327731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ38_RS16130 (HUZ38_16110) aphA 3317509..3318222 (+) 714 WP_004151745.1 acid phosphatase AphA -
  HUZ38_RS16135 (HUZ38_16115) - 3318353..3318769 (+) 417 WP_002884951.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HUZ38_RS16140 (HUZ38_16120) - 3318773..3319129 (+) 357 WP_002884953.1 MmcQ/YjbR family DNA-binding protein -
  HUZ38_RS16145 (HUZ38_16125) uvrA 3319130..3321955 (-) 2826 WP_020324826.1 excinuclease ABC subunit UvrA -
  HUZ38_RS16150 (HUZ38_16130) ssb 3322207..3322731 (+) 525 WP_004151744.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HUZ38_RS16155 (HUZ38_16135) - 3322856..3324436 (-) 1581 WP_020324827.1 lytic transglycosylase F -
  HUZ38_RS16160 (HUZ38_16140) - 3325024..3327282 (+) 2259 WP_020324837.1 TonB-dependent siderophore receptor -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18711.70 Da        Isoelectric Point: 5.2358

>NTDB_id=456817 HUZ38_RS16150 WP_004151744.1 3322207..3322731(+) (ssb) [Klebsiella pneumoniae strain STEFF_2]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=456817 HUZ38_RS16150 WP_004151744.1 3322207..3322731(+) (ssb) [Klebsiella pneumoniae strain STEFF_2]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCTGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACCG
AGTGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCACAGGTGTACATT
GAAGGCCAGCTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACCGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCGCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGGCCCCGGCAGCGCCT
TCCAACGAACCGCCGATGGACTTCGACGACGACATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.776
  ssb Glaesserella parasuis strain SC1401

59.239

100

0.626
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5