Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUZ44_RS20905 Genome accession   NZ_CP055184
Coordinates   4347203..4347739 (-) Length   178 a.a.
NCBI ID   WP_179764891.1    Uniprot ID   A0A853DWG6
Organism   Shigella flexneri strain STEFF_16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4342203..4352739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ44_RS20885 (HUZ44_20760) soxR 4343931..4344395 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  HUZ44_RS20890 (HUZ44_20765) soxS 4344481..4344804 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HUZ44_RS20895 (HUZ44_20770) pdeC 4344807..4346393 (-) 1587 WP_000019539.1 c-di-GMP phosphodiesterase PdeC -
  HUZ44_RS20900 (HUZ44_20775) - 4346823..4347104 (+) 282 WP_001295689.1 YjcB family protein -
  HUZ44_RS20905 (HUZ44_20780) ssb 4347203..4347739 (-) 537 WP_179764891.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HUZ44_RS20910 (HUZ44_20785) uvrA 4347993..4350815 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HUZ44_RS20915 (HUZ44_20790) - 4350850..4351206 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HUZ44_RS20920 (HUZ44_20795) - 4351210..4351626 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HUZ44_RS20925 (HUZ44_20800) aphA 4351737..4352450 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18990.99 Da        Isoelectric Point: 5.2358

>NTDB_id=456726 HUZ44_RS20905 WP_179764891.1 4347203..4347739(-) (ssb) [Shigella flexneri strain STEFF_16]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGSQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=456726 HUZ44_RS20905 WP_179764891.1 4347203..4347739(-) (ssb) [Shigella flexneri strain STEFF_16]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCTCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853DWG6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

47.514

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.483