Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HU689_RS19180 Genome accession   NZ_CP055159
Coordinates   4307238..4307954 (-) Length   238 a.a.
NCBI ID   WP_044735256.1    Uniprot ID   -
Organism   Shewanella algae strain 2NE11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4302238..4312954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU689_RS19170 (HU689_19175) - 4305025..4305939 (-) 915 WP_144163968.1 LysR family transcriptional regulator -
  HU689_RS19175 (HU689_19180) - 4306065..4307174 (+) 1110 WP_144163969.1 HisA/HisF-related TIM barrel protein -
  HU689_RS19180 (HU689_19185) ssb 4307238..4307954 (-) 717 WP_044735256.1 single-stranded DNA-binding protein Machinery gene
  HU689_RS19185 (HU689_19190) - 4307989..4309356 (-) 1368 WP_156018659.1 MFS transporter -
  HU689_RS19190 (HU689_19195) uvrA 4309577..4312399 (+) 2823 WP_101058423.1 excinuclease ABC subunit UvrA -
  HU689_RS19195 (HU689_19200) - 4312407..4312757 (+) 351 WP_129586019.1 hypothetical protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26172.53 Da        Isoelectric Point: 5.9130

>NTDB_id=456471 HU689_RS19180 WP_044735256.1 4307238..4307954(-) (ssb) [Shewanella algae strain 2NE11]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVMFGKLAEIAGEYLRKGSQVYLE
GKLQTRKWKDQSGQDKYTTEVVVDMGGTMQMLGGRNQNQGGMSQGGNQGGMNQGGMNQSQGSYGGGQAQSQSQYNAPQQS
GGYQPKPAQQPQQPQQQYNAPQQQSYGQQQNSGYAPKPQQPAPQQQAAPQQRPAPQPQPQQQNYTPDLDDGWDDDIPF

Nucleotide


Download         Length: 717 bp        

>NTDB_id=456471 HU689_RS19180 WP_044735256.1 4307238..4307954(-) (ssb) [Shewanella algae strain 2NE11]
ATGGCCAGTCGTGGTGTTAATAAGGTAATTCTGGTGGGCAATCTGGGACAGGACCCAGAGGTGCGCTACATGCCAAACGG
CAACGCCGTAGCGAATATCACAGTGGCCACCAGTGAGTCATGGAAGGACCAACAGGGCCAACAGCAAGAGCGTACCGAGT
GGCACAGGGTTGTCATGTTCGGCAAGCTGGCTGAAATTGCCGGTGAGTACCTGCGCAAAGGCTCGCAAGTGTATCTGGAA
GGTAAGCTGCAGACCCGCAAGTGGAAAGATCAGAGCGGTCAGGACAAGTACACCACTGAAGTGGTTGTTGATATGGGCGG
TACCATGCAGATGCTGGGTGGCCGTAACCAAAACCAAGGCGGTATGAGCCAAGGCGGCAATCAGGGTGGTATGAACCAAG
GTGGTATGAACCAAAGCCAAGGTAGTTACGGTGGTGGTCAGGCACAGTCTCAATCTCAATACAATGCGCCACAGCAGTCC
GGCGGCTATCAGCCCAAGCCTGCTCAGCAACCGCAGCAGCCACAACAGCAGTACAACGCGCCGCAGCAGCAAAGCTATGG
TCAGCAGCAGAACTCAGGTTATGCGCCCAAGCCACAGCAGCCAGCGCCGCAACAACAGGCAGCTCCGCAACAGCGGCCGG
CACCACAGCCTCAGCCACAACAGCAGAACTACACGCCGGATCTGGATGACGGCTGGGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.333

100

0.538
  ssb Glaesserella parasuis strain SC1401

46.383

98.739

0.458
  ssb Neisseria gonorrhoeae MS11

42.489

97.899

0.416
  ssb Neisseria meningitidis MC58

41.631

97.899

0.408