Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUW35_RS02640 Genome accession   NZ_CP055157
Coordinates   624087..624671 (-) Length   194 a.a.
NCBI ID   WP_181254151.1    Uniprot ID   A0A7H8PUK6
Organism   Microbulbifer sp. YPW1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 619087..629671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW35_RS02620 (HUW35_02620) galU 620207..621043 (-) 837 WP_181254148.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HUW35_RS02625 (HUW35_02625) fabA 621301..621825 (+) 525 WP_078084640.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  HUW35_RS02630 (HUW35_02630) fabB 621921..623144 (+) 1224 WP_181254149.1 beta-ketoacyl-ACP synthase I -
  HUW35_RS02635 (HUW35_02635) - 623224..624069 (-) 846 WP_181254150.1 sugar nucleotide-binding protein -
  HUW35_RS02640 (HUW35_02640) ssb 624087..624671 (-) 585 WP_181254151.1 single-stranded DNA-binding protein Machinery gene
  HUW35_RS02645 (HUW35_02645) - 624878..626050 (-) 1173 WP_181254152.1 MFS transporter -
  HUW35_RS02650 (HUW35_02650) - 626191..627594 (-) 1404 WP_181254153.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20936.87 Da        Isoelectric Point: 5.2957

>NTDB_id=456435 HUW35_RS02640 WP_181254151.1 624087..624671(-) (ssb) [Microbulbifer sp. YPW1]
MARGVNKVILIGNLGGDPETRYMPSGGAVTNVTLATSETWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYLRKGSKVYLE
GSLRTRKWQDKTSGQDRYTTEIVASEMQMLDGRGEQGGGGFQQGGGQGFQQQGGGYGQQGQQGGGYQDEFSQGRSAPSPM
APANQPAGQPQNKPAGNQPPAGGFDNSFDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=456435 HUW35_RS02640 WP_181254151.1 624087..624671(-) (ssb) [Microbulbifer sp. YPW1]
ATGGCCAGGGGCGTTAACAAAGTAATCCTGATTGGCAACCTGGGTGGTGACCCGGAAACCCGCTACATGCCCAGTGGTGG
TGCCGTCACCAATGTCACCCTGGCGACGTCCGAAACCTGGAAAGACAAGCAGACCGGCCAGCAGCAGGAGCGCACCGAGT
GGCACCGTGTGGTGTTCTTCAACCGCCTCGCGGAAATTGCTGGCGAATACCTGCGCAAGGGCAGCAAGGTTTACCTGGAA
GGTTCCCTGCGCACCCGCAAGTGGCAGGACAAGACCTCCGGCCAGGATCGCTACACCACCGAAATCGTTGCCAGTGAAAT
GCAGATGCTGGATGGCCGCGGTGAGCAGGGTGGCGGTGGCTTCCAGCAGGGCGGTGGCCAGGGCTTCCAGCAGCAGGGTG
GCGGATACGGTCAGCAGGGCCAGCAGGGCGGTGGTTATCAGGACGAGTTCTCCCAGGGCCGCTCCGCACCTTCTCCCATG
GCGCCGGCCAACCAGCCCGCGGGCCAGCCGCAGAACAAGCCAGCAGGCAATCAGCCGCCGGCGGGTGGATTCGATAACAG
CTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8PUK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.838

100

0.567
  ssb Glaesserella parasuis strain SC1401

52.356

98.454

0.515
  ssb Neisseria gonorrhoeae MS11

48.705

99.485

0.485
  ssb Neisseria meningitidis MC58

46.667

100

0.469