Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUW48_RS02820 Genome accession   NZ_CP055153
Coordinates   553636..554073 (-) Length   145 a.a.
NCBI ID   WP_182414230.1    Uniprot ID   A0A7L7L2L4
Organism   Adhaeribacter radiodurans strain KUDC8001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 548636..559073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW48_RS02800 (HUW48_02800) - 549208..549396 (+) 189 WP_182414227.1 hypothetical protein -
  HUW48_RS02805 (HUW48_02805) recG 549407..551500 (-) 2094 WP_182414228.1 ATP-dependent DNA helicase RecG -
  HUW48_RS02810 (HUW48_02810) gldD 551661..552272 (-) 612 WP_182414229.1 gliding motility lipoprotein GldD -
  HUW48_RS02815 (HUW48_02815) gldE 552232..553608 (-) 1377 WP_246343669.1 gliding motility-associated protein GldE -
  HUW48_RS02820 (HUW48_02820) ssb 553636..554073 (-) 438 WP_182414230.1 single-stranded DNA-binding protein Machinery gene
  HUW48_RS02825 (HUW48_02825) mutY 554121..555200 (-) 1080 WP_182414231.1 A/G-specific adenine glycosylase -
  HUW48_RS02830 (HUW48_02830) - 555404..555712 (+) 309 WP_182414232.1 HU family DNA-binding protein -
  HUW48_RS02835 (HUW48_02835) - 555827..556657 (+) 831 WP_182414233.1 tetratricopeptide repeat protein -
  HUW48_RS02840 (HUW48_02840) - 556916..558529 (+) 1614 WP_182414234.1 Rne/Rng family ribonuclease -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15826.58 Da        Isoelectric Point: 5.0359

>NTDB_id=456411 HUW48_RS02820 WP_182414230.1 553636..554073(-) (ssb) [Adhaeribacter radiodurans strain KUDC8001]
MASVNKVILVGNLGKDPEVRHLEGGVAVARFPIATSETFKDKNGEKQERTEWHNIVVWRGLAEVAEKYLKKGQSVYIEGK
IRTNNYQDKEGIQRYSTEIVADNMTMLGGRTDAGANNSNPETAGSSSGGRAEAPAFEGEPDDLPF

Nucleotide


Download         Length: 438 bp        

>NTDB_id=456411 HUW48_RS02820 WP_182414230.1 553636..554073(-) (ssb) [Adhaeribacter radiodurans strain KUDC8001]
ATGGCAAGTGTAAACAAAGTAATTTTAGTAGGTAATTTGGGCAAAGATCCGGAAGTACGGCATCTGGAAGGCGGCGTAGC
TGTAGCTCGTTTTCCGATTGCTACTTCTGAGACTTTTAAAGATAAAAATGGCGAAAAGCAGGAACGCACCGAGTGGCACA
ACATTGTGGTATGGCGTGGTTTAGCTGAAGTAGCCGAGAAATACTTAAAAAAAGGGCAATCAGTTTACATTGAAGGTAAA
ATCAGAACGAACAATTATCAGGATAAAGAAGGTATTCAGCGTTACTCCACCGAAATAGTAGCCGATAACATGACTATGTT
AGGTGGCCGGACCGATGCCGGAGCAAATAACAGCAACCCGGAAACGGCTGGTTCGAGTTCAGGCGGGCGGGCTGAAGCGC
CGGCCTTTGAGGGTGAACCAGATGATTTGCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L7L2L4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50

100

0.517
  ssb Neisseria gonorrhoeae MS11

48

100

0.497
  ssb Glaesserella parasuis strain SC1401

49.265

93.793

0.462
  ssb Neisseria meningitidis MC58

58.182

75.862

0.441