Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUZ88_RS22270 Genome accession   NZ_CP055089
Coordinates   4627119..4627643 (-) Length   174 a.a.
NCBI ID   WP_003826621.1    Uniprot ID   A0A5B0T4S2
Organism   Citrobacter portucalensis strain SWHIN_111     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4622119..4632643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ88_RS22250 (HUZ88_22210) soxR 4623761..4624219 (-) 459 WP_003826630.1 redox-sensitive transcriptional activator SoxR -
  HUZ88_RS22255 (HUZ88_22215) soxS 4624306..4624629 (+) 324 WP_003031731.1 superoxide response transcriptional regulator SoxS -
  HUZ88_RS22260 (HUZ88_22220) - 4624632..4626218 (-) 1587 WP_149607436.1 EAL domain-containing protein -
  HUZ88_RS22265 (HUZ88_22225) - 4626771..4627052 (+) 282 WP_003826625.1 YjcB family protein -
  HUZ88_RS22270 (HUZ88_22230) ssb 4627119..4627643 (-) 525 WP_003826621.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HUZ88_RS22275 (HUZ88_22235) uvrA 4627895..4630717 (+) 2823 WP_239605683.1 excinuclease ABC subunit UvrA -
  HUZ88_RS22280 (HUZ88_22240) - 4631495..4631851 (-) 357 WP_008786927.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18621.66 Da        Isoelectric Point: 5.2456

>NTDB_id=456176 HUZ88_RS22270 WP_003826621.1 4627119..4627643(-) (ssb) [Citrobacter portucalensis strain SWHIN_111]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=456176 HUZ88_RS22270 WP_003826621.1 4627119..4627643(-) (ssb) [Citrobacter portucalensis strain SWHIN_111]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACAGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGTGGTGGTGCTCCGGCAGGTGGCGGTCAGCAGCAGGGCGGTTGGGGTC
AACCTCAGCAGCCGCAGGGTGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGCCCGCAACAGTCAGCGCCGGCAGCACCG
TCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B0T4S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

56.831

100

0.598
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5